Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-198 694.1 349 100.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-126 456.4 240 97.1
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-125 453.0 236 97.0
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-125 452.6 239 96.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-122 443.7 236 96.6
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-119 432.6 236 92.8
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-118 429.5 236 92.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-113 412.9 236 88.1
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.4e-113 411.8 233 86.7
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 3.6e-109 399.1 236 85.2
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-108 397.1 202 98.5
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 4.0e-108 395.6 229 85.2
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.6e-107 392.9 228 86.4
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 6.0e-104 381.7 228 82.9
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 6.0e-104 381.7 228 83.3
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.9e-103 379.0 236 79.7
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 1.1e-102 377.5 236 79.7
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 9.5e-102 374.4 232 81.0
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-101 374.0 231 80.5
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.6e-101 373.6 233 79.4
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.1e-101 373.2 228 79.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 4.7e-101 372.1 228 81.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 6.2e-101 371.7 227 81.9
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.3e-100 369.8 227 80.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.0e-100 369.0 236 80.5
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.9e-100 367.9 234 76.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-99 366.3 239 79.9
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 7.5e-99 364.8 231 77.5
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.2e-98 363.2 231 77.5
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.9e-98 362.8 227 79.3
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.4e-97 360.5 227 79.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.4e-97 359.8 227 78.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 9.2e-97 357.8 227 77.1
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.1e-96 356.7 227 77.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 2.7e-96 356.3 231 75.3
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.7e-96 356.3 231 76.6
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 3.5e-96 355.9 227 77.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 7.8e-96 354.8 229 76.4
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.3e-95 354.0 227 77.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.7e-95 353.6 227 77.5
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.3e-95 353.2 228 75.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.3e-95 353.2 228 77.6
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 3.0e-95 352.8 228 76.3
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 3.9e-95 352.4 258 70.5
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.1e-95 352.1 228 77.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.6e-95 351.7 230 73.9
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-94 350.5 224 76.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.5e-94 350.5 233 72.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.9e-94 350.1 234 71.8
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.9e-94 350.1 229 76.0
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.9e-94 350.1 230 73.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.5e-94 349.7 230 74.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.3e-94 349.4 232 74.6
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.3e-94 349.0 229 74.2
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.6e-94 348.6 228 75.0
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 7.3e-94 348.2 227 78.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 7.3e-94 348.2 235 71.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 9.5e-94 347.8 228 73.7
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.5e-94 347.8 229 73.8
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 9.5e-94 347.8 233 72.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.2e-93 347.4 224 75.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.2e-93 347.4 233 72.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.2e-93 347.4 227 76.7
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.6e-93 347.1 229 73.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.6e-93 347.1 232 72.8
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.6e-93 347.1 227 76.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.1e-93 346.7 230 73.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.8e-93 346.3 227 76.7
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.8e-93 346.3 228 75.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.8e-93 346.3 231 75.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.6e-93 345.9 227 76.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 6.2e-93 345.1 229 73.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.2e-93 345.1 231 71.0
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.1e-93 344.7 229 74.7
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.1e-92 344.4 232 71.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.3e-92 343.2 209 81.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.2e-92 342.0 227 74.9
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 5.2e-92 342.0 227 74.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 6.8e-92 341.7 232 71.1
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 8.9e-92 341.3 227 75.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.2e-91 340.9 233 70.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.5e-91 340.5 227 74.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.0e-91 340.1 227 73.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.4e-91 339.3 224 73.7
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.4e-91 339.3 227 74.0
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.4e-91 339.3 233 70.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 4.4e-91 339.0 227 73.1
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.8e-91 338.6 228 71.5
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.8e-91 338.6 229 73.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 5.8e-91 338.6 227 73.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 7.6e-91 338.2 232 70.3
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 9.9e-91 337.8 268 65.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.9e-90 336.3 228 71.1
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.9e-90 336.3 223 73.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.9e-90 335.5 218 78.4
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.4e-90 335.1 228 71.1
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 6.4e-90 335.1 224 73.2
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.1e-89 334.3 228 71.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.9e-89 333.6 227 72.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.1e-89 332.4 224 71.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.1e-89 331.6 313 57.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 9.2e-89 331.3 228 71.1
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.6e-88 330.5 228 70.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 4.6e-88 328.9 228 69.7
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.6e-88 328.9 234 70.5
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 6.0e-88 328.6 228 69.7
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 7.8e-88 328.2 228 70.2
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 7.8e-88 328.2 228 69.3
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.0e-87 327.8 234 70.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.0e-87 326.2 224 70.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.0e-87 326.2 228 69.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.6e-87 325.1 228 68.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-86 324.3 228 68.9
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.2e-85 320.9 212 72.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.6e-85 320.5 228 68.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.5e-83 313.9 227 66.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.3e-82 310.8 221 70.1
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.9e-81 307.0 221 68.8
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.5e-80 302.8 204 73.0
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.0e-79 301.2 227 63.9
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.9e-79 299.3 229 65.1
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 5.1e-79 298.9 223 68.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 5.1e-79 298.9 196 75.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.1e-78 297.7 192 76.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.1e-76 289.7 221 64.3
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.1e-76 289.7 227 63.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.9e-76 288.5 195 72.8
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-72 276.9 147 92.5
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.4e-70 268.5 238 59.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 4.8e-69 265.8 178 74.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.1e-68 263.1 144 90.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.0e-64 248.8 124 98.4
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 9.6e-62 241.5 182 68.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 3.1e-60 236.5 220 55.0
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.0e-60 236.1 133 85.7
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.5e-59 234.2 155 74.8
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.3e-58 231.1 221 51.1
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.1e-57 228.0 226 50.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.6e-56 224.2 228 50.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 3.1e-52 209.9 144 72.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-50 203.8 119 82.4
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.6e-48 196.4 135 72.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.3e-47 193.7 140 69.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.1e-44 183.0 134 67.2
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.2e-43 181.4 143 65.0
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-43 180.6 146 63.7
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.9e-43 179.1 126 73.0
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-42 177.6 138 61.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 8.5e-42 175.3 142 59.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.7e-37 159.8 202 43.1
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-35 154.8 185 44.3
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 6.5e-34 149.1 88 83.0
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 8.5e-34 148.7 85 82.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.4e-33 147.9 97 75.3
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.2e-33 146.7 109 67.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 9.4e-33 145.2 114 63.2
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 6.1e-32 142.5 191 44.5
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.8e-31 141.0 102 69.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.8e-31 141.0 98 76.5
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-29 133.7 86 79.1
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.8e-29 133.7 92 77.2
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.8e-29 132.9 86 76.7
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.4e-28 130.6 82 78.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 5.3e-28 129.4 90 72.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.3e-28 129.4 85 72.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.0e-26 125.2 103 61.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.0e-26 125.2 95 67.4
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 2.9e-26 123.6 96 62.5
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 6.5e-26 122.5 145 49.7
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-24 117.9 77 75.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.0e-23 113.6 130 48.5
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 6.7e-23 112.5 68 80.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 8.8e-23 112.1 106 58.5
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-17 94.4 63 73.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 2.7e-16 90.5 59 74.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.4e-15 88.2 187 30.5
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-15 87.8 51 84.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-15 87.0 60 71.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.0e-14 84.3 219 27.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.6e-14 84.0 68 64.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.9e-10 70.5 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-09 68.6 67 52.2


User provided reference genes

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