Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-196 688.3 368 100.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.8e-194 681.4 368 98.9
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-191 672.5 365 98.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-189 664.1 365 96.7
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.4e-188 662.9 368 95.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.1e-164 580.9 371 84.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.3e-162 576.6 372 82.8
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 8.1e-152 540.8 365 81.4
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.8e-149 531.9 369 78.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.8e-149 531.9 369 78.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 5.1e-146 521.5 369 76.4
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.5e-145 520.0 375 78.4
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.3e-145 518.5 371 77.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 4.0e-143 511.9 370 77.3
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.3e-141 506.9 368 75.5
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.7e-141 506.5 376 75.5
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.4e-140 503.4 368 76.4
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.4e-140 503.4 371 76.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.6e-139 500.0 379 72.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.6e-139 500.0 374 75.1
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 6.0e-139 498.0 370 75.1
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 7.9e-139 497.7 368 75.8
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 7.9e-139 497.7 374 75.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.7e-138 494.6 373 74.3
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-137 493.8 379 72.0
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 7.4e-137 491.1 370 74.1
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.3e-136 490.3 375 74.1
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.8e-136 489.2 361 75.6
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 6.2e-136 488.0 341 77.4
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-135 487.3 364 75.0
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.1e-135 485.7 375 73.3
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.1e-135 485.7 378 72.5
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 5.3e-135 485.0 339 77.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.3e-135 485.0 344 76.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.0e-135 484.2 327 78.9
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.2e-134 483.8 342 77.5
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.6e-134 482.6 365 75.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.4e-134 482.3 345 76.2
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.4e-134 482.3 365 74.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.5e-134 481.9 341 78.0
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 5.8e-134 481.5 365 74.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 7.6e-134 481.1 371 72.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.7e-133 479.9 365 74.2
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.2e-133 479.6 373 72.9
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.2e-133 479.6 374 73.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.2e-133 479.6 373 72.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.9e-133 479.2 365 74.8
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.9e-133 479.2 343 76.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.8e-133 478.8 365 74.0
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.9e-133 478.4 370 71.9
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 4.9e-133 478.4 377 70.6
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 6.4e-133 478.0 373 72.9
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 6.4e-133 478.0 373 72.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 6.4e-133 478.0 365 74.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.4e-133 477.6 344 75.6
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.9e-132 476.5 326 78.8
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.9e-132 476.5 342 76.0
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.4e-132 476.1 338 76.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.2e-132 475.7 365 74.0
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-132 475.7 365 74.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.2e-131 473.8 365 73.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-131 473.4 355 75.8
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-131 473.4 361 75.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-131 473.4 361 75.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.6e-131 473.4 357 75.4
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.7e-131 472.6 351 75.5
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.7e-131 472.6 355 75.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-131 472.2 354 74.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.6e-131 471.9 380 71.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.3e-130 470.3 342 75.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.8e-130 469.9 363 74.1
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 3.9e-130 468.8 327 76.8
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 5.1e-130 468.4 326 76.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.7e-130 467.6 343 77.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 8.7e-130 467.6 377 69.5
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.1e-129 467.2 329 77.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.5e-129 466.8 339 75.5
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.5e-129 466.8 339 74.3
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.9e-129 466.5 338 75.4
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.3e-128 463.8 379 67.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.3e-128 463.8 356 72.2
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.1e-128 463.0 373 71.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-128 463.0 332 75.0
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.1e-128 463.0 355 72.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.8e-128 462.6 359 72.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 3.7e-128 462.2 378 69.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.8e-128 461.8 332 74.7
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 4.8e-128 461.8 355 72.4
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 6.2e-128 461.5 358 71.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 6.2e-128 461.5 322 78.6
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 8.2e-128 461.1 370 68.6
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.1e-127 460.7 322 77.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 3.1e-127 459.1 364 69.8
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.5e-126 456.8 342 74.3
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 7.6e-126 454.5 344 71.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.0e-125 454.1 348 73.3
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.3e-125 453.8 322 77.3
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-125 453.4 359 70.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 6.5e-125 451.4 376 62.8
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 8.4e-125 451.1 359 69.9
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.1e-124 450.7 373 68.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.1e-124 450.7 339 72.0
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.5e-124 448.4 315 76.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 7.1e-124 448.0 335 71.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.1e-123 446.4 343 70.6
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 4.6e-123 445.3 370 69.7
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.0e-122 442.6 328 71.6
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 8.7e-122 441.0 354 71.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.8e-120 436.0 370 67.8
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.4e-119 433.0 370 67.6
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.2e-118 430.6 370 67.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 7.6e-118 427.9 367 65.4
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.5e-117 424.5 364 66.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-113 413.3 350 66.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.9e-113 413.3 373 62.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.8e-112 408.7 328 68.6
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-108 396.4 317 73.8
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.8e-104 382.9 370 63.2
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.0e-102 376.7 369 62.6
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-100 370.5 298 71.5
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.5e-100 369.8 335 62.1
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 9.4e-100 367.9 333 63.4
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.0e-97 360.1 334 60.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 1.0e-93 347.8 243 79.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.7e-93 347.1 247 78.1
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-91 340.9 349 57.9
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.8e-90 337.0 289 67.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.6e-89 333.2 351 55.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 8.2e-88 328.2 323 58.2
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.7e-85 320.5 206 77.7
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.8e-85 319.3 297 57.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.0e-82 309.7 337 56.1
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 8.6e-77 291.6 350 54.6
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.1e-76 291.2 324 54.6
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 8.0e-67 258.5 233 60.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.4e-57 226.1 209 59.8
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.9e-50 201.8 233 51.1
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.3e-45 188.0 130 76.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 4.0e-42 176.4 146 65.1
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.4e-41 173.3 165 56.4
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 8.7e-37 158.7 103 75.7
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.1e-35 154.1 164 56.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.1e-31 141.7 96 72.9
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.6e-30 137.9 90 72.2
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-28 131.0 95 68.4
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-26 124.4 78 80.8
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.1e-26 123.6 128 52.3
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.2e-23 113.2 120 56.7
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-22 111.7 102 60.8
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-22 111.3 95 64.2
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.9e-21 106.7 284 32.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.1e-19 100.9 108 50.0
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-18 98.2 66 75.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-17 94.0 87 55.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.6e-14 83.2 52 80.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 4.6e-14 83.2 316 29.1
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 3.0e-13 80.5 184 34.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.9e-13 80.1 52 80.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.9e-13 80.1 52 76.9
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.7e-13 79.0 52 76.9
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.7e-13 79.0 52 76.9
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.9e-12 77.8 178 35.4
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.6e-12 76.3 52 76.9
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 8.2e-11 72.4 63 65.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.2e-11 72.4 77 54.5
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.2e-11 72.4 77 54.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 3.1e-10 70.5 42 83.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 2.0e-09 67.8 56 60.7
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.7e-08 64.7 52 59.6
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 4.9e-08 63.2 69 53.6
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-07 61.6 73 50.7
FAN02G1819 Fragaria x ananassa HOM05D024693 ORTHO05D004814 7.1e-07 59.3 89 44.9
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-06 56.6 43 65.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.6e-06 56.6 64 48.4
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 6.1e-06 56.2 136 29.4


User provided reference genes

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