Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-173 612.8 337 100.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.2e-165 586.6 361 91.4
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.5e-163 578.9 361 90.6
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.7e-161 570.9 354 91.5
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.1e-160 570.1 362 89.5
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 3.2e-147 525.4 353 83.3
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 6.1e-130 468.0 332 80.1
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.0e-125 453.0 324 78.1
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 4.0e-121 438.7 353 72.0
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 7.0e-118 427.9 329 71.7
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 1.6e-114 416.8 329 72.6
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.4e-113 413.7 314 73.2
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.9e-111 405.2 339 61.1
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 8.3e-111 404.4 330 67.6
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.1e-110 404.1 327 69.7
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.8e-110 403.3 332 69.0
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 2.4e-110 402.9 335 60.0
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.2e-109 400.6 332 70.5
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 2.7e-109 399.4 336 67.0
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.7e-108 396.7 329 67.5
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 2.9e-108 396.0 328 66.8
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.1e-107 394.0 328 68.3
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.5e-107 393.7 332 67.5
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 2.5e-107 392.9 329 63.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 7.3e-107 391.3 329 63.5
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.8e-106 389.4 343 67.9
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.4e-105 387.1 323 69.3
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.2e-105 385.2 328 63.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 8.9e-105 384.4 326 68.1
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 1.2e-104 384.0 327 68.5
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 3.4e-104 382.5 333 64.6
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 3.4e-104 382.5 334 62.0
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.4e-102 377.1 375 59.2
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.9e-102 376.7 337 62.0
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.0e-101 373.2 344 54.4
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 2.7e-101 372.9 336 61.9
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 7.8e-101 371.3 332 65.4
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.3e-100 370.5 352 65.6
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 6.6e-100 368.2 331 56.8
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.3e-99 365.5 336 61.3
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 9.5e-99 364.4 331 61.0
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.6e-98 363.6 343 56.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 4.7e-98 362.1 326 66.0
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 8.1e-98 361.3 327 60.2
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 4.0e-97 359.0 333 56.2
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 7.5e-96 354.8 327 60.6
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 7.5e-96 354.8 340 54.7
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.7e-95 353.6 331 63.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 3.2e-94 349.4 326 59.2
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 5.4e-94 348.6 329 65.3
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 9.2e-94 347.8 343 58.6
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.2e-93 347.4 339 55.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.2e-93 347.4 325 53.5
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 2.7e-93 346.3 341 63.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.3e-92 344.0 326 53.1
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.7e-92 343.6 335 59.1
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 3.3e-91 339.3 332 62.0
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.8e-90 336.3 339 56.6
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 1.4e-89 334.0 329 55.6
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.2e-88 330.9 349 59.9
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.7e-87 327.0 345 50.7
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.1e-86 324.3 326 57.1
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.9e-86 323.6 338 51.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 9.2e-86 321.2 352 52.6
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.6e-85 320.5 283 56.5
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 2.7e-85 319.7 316 59.5
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.7e-85 319.7 332 57.8
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 1.0e-84 317.8 349 51.3
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 1.7e-84 317.0 326 50.9
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 3.0e-84 316.2 336 54.2
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 3.9e-84 315.8 346 58.1
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 6.6e-84 315.1 346 58.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 1.5e-83 313.9 346 57.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 4.7e-82 308.9 331 55.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.2e-80 304.3 337 57.9
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-80 304.3 337 57.9
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.2e-80 304.3 337 57.9
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.2e-80 304.3 337 57.9
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.2e-80 304.3 358 56.7
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 5.8e-80 302.0 337 57.3
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 7.6e-80 301.6 352 52.8
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.9e-79 298.9 342 57.6
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.1e-78 297.7 353 45.9
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.4e-78 297.4 347 55.0
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.4e-78 297.4 377 54.1
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.4e-78 295.4 347 53.3
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.1e-78 295.0 323 50.2
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 7.1e-78 295.0 330 52.4
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.6e-77 293.9 349 55.0
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.7e-76 290.4 353 49.9
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.3e-76 290.0 328 53.0
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 2.3e-76 290.0 339 49.3
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.0e-76 289.7 359 43.2
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.6e-76 288.5 324 46.0
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.1e-75 287.7 374 52.7
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.1e-75 287.7 324 45.4
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-75 287.0 324 46.3
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.5e-75 286.6 329 55.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.4e-73 280.8 340 48.2
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 1.9e-70 270.4 340 55.3
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.9e-69 265.0 324 43.8
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 1.7e-68 263.8 334 47.3
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 5.6e-67 258.8 317 50.2
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 4.0e-65 252.7 272 56.2
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 2.2e-63 246.9 317 44.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 1.9e-62 243.8 336 42.3
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 8.7e-60 235.0 332 41.0
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 8.1e-58 228.4 152 75.0
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 5.3e-57 225.7 127 82.7
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.7e-55 220.7 335 45.1
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.7e-55 220.7 325 40.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 6.5e-55 218.8 343 48.4
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 3.9e-52 209.5 398 35.2
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 2.9e-47 193.4 161 62.7
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-46 191.0 247 41.3
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.5e-43 180.3 172 59.3
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.6e-42 177.6 358 36.6
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.7e-40 168.7 116 60.3
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.5e-35 154.5 167 47.3
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 1.2e-29 134.8 344 29.4
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.0e-27 127.5 324 29.3
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.7e-26 123.2 342 28.1
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.7e-26 123.2 139 45.3
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.6e-24 117.9 337 27.0
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.7e-23 114.4 337 26.7
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 7.2e-22 109.0 164 43.9
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.0e-20 103.2 94 48.9
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 8.0e-13 79.0 160 37.5
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 9.1e-09 65.5 64 50.0
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 4.2e-06 56.6 94 35.1
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 5.5e-06 56.2 88 36.4
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 9.5e-06 55.5 152 28.9


User provided reference genes

Program Settings