Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 9.1e-151 537.0 287 100.0
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.2e-120 436.0 244 97.5
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.4e-120 434.5 244 97.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.1e-119 431.8 244 93.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 5.2e-106 388.3 244 86.1
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 6.6e-93 344.7 244 71.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 3.3e-92 342.4 244 71.7
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-88 329.3 244 68.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.6e-78 297.0 247 61.9
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.3e-76 288.9 249 62.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.4e-76 288.1 247 62.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 7.4e-76 288.1 247 61.5
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 7.4e-76 288.1 247 61.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.8e-75 285.4 243 60.5
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.4e-74 283.9 247 59.9
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.8e-74 283.5 247 63.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.8e-74 283.5 246 61.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 6.9e-74 281.6 247 59.1
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.2e-73 280.8 249 59.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 4.5e-73 278.9 245 58.4
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.8e-73 278.5 244 62.7
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.2e-72 276.6 247 57.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.9e-72 276.2 247 57.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 8.4e-72 274.6 247 57.9
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.4e-72 274.6 247 57.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.1e-71 274.2 247 57.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-71 273.9 244 59.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-71 273.9 244 59.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-71 272.7 247 56.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 3.2e-71 272.7 251 57.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 3.2e-71 272.7 241 60.6
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 4.2e-71 272.3 247 57.5
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 7.1e-71 271.6 246 55.7
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-70 270.8 254 57.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-70 268.9 183 69.4
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.9e-70 268.1 250 55.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.3e-69 267.3 248 59.3
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.3e-69 266.5 248 54.4
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.0e-69 266.2 189 69.3
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 5.1e-69 265.4 245 57.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.7e-69 264.6 177 70.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.7e-69 264.6 256 55.1
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.1e-68 264.2 245 57.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-68 264.2 248 57.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.5e-68 263.8 250 59.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.9e-68 263.5 242 57.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.9e-68 263.5 246 56.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 3.3e-68 262.7 244 56.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.3e-68 262.7 248 55.2
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 9.7e-68 261.2 250 57.6
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.6e-67 260.4 245 55.9
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.8e-67 259.6 244 54.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.7e-67 259.2 203 62.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 8.2e-67 258.1 250 56.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.2e-67 258.1 246 56.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.1e-66 257.7 241 55.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.1e-66 257.7 210 61.4
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.8e-66 256.9 245 55.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.4e-66 256.5 241 56.0
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.4e-66 256.5 247 55.1
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 3.1e-66 256.1 252 53.2
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.1e-66 256.1 245 56.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 6.9e-66 255.0 242 55.4
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 6.9e-66 255.0 251 54.6
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 9.0e-66 254.6 199 63.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.0e-66 254.6 247 55.1
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.5e-65 253.8 242 55.0
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.5e-65 253.8 246 55.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.6e-65 253.1 176 69.3
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.6e-65 253.1 261 51.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.6e-65 253.1 176 68.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.6e-65 253.1 176 68.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.6e-65 253.1 248 56.0
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.4e-65 252.7 255 52.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.4e-65 252.7 244 54.5
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 4.5e-65 252.3 241 53.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.5e-65 252.3 176 67.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.5e-65 252.3 248 55.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.5e-65 252.3 250 55.2
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.9e-65 251.9 241 54.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 5.9e-65 251.9 177 66.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 7.7e-65 251.5 251 55.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.0e-64 251.1 176 70.5
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.3e-64 250.8 248 55.6
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.8e-64 249.2 248 53.6
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.8e-64 249.2 244 53.7
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-64 248.8 199 62.3
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-64 248.8 241 55.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-64 248.8 199 62.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.0e-64 248.8 244 52.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.0e-64 248.8 241 56.0
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 5.0e-64 248.8 241 56.0
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 6.5e-64 248.4 247 55.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 6.5e-64 248.4 231 55.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 8.5e-64 248.1 245 54.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.5e-64 248.1 162 74.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.9e-63 246.9 176 67.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.9e-63 246.9 181 65.2
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 5.5e-63 245.4 245 53.9
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 5.5e-63 245.4 250 54.4
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 7.2e-63 245.0 254 53.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 9.4e-63 244.6 255 53.7
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 9.4e-63 244.6 255 52.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 7.9e-62 241.5 243 51.0
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 7.9e-62 241.5 256 52.0
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.4e-61 240.7 181 64.1
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.4e-61 240.7 255 51.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.8e-61 240.4 242 53.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.9e-61 239.2 184 62.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 8.8e-61 238.0 211 57.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.8e-61 238.0 167 65.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.5e-60 237.3 229 55.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.5e-60 236.5 176 63.1
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.3e-60 236.1 244 54.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.3e-60 235.7 255 51.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.4e-60 235.0 162 66.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 9.7e-60 234.6 243 52.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.4e-58 230.7 244 51.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.8e-58 230.3 249 49.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.1e-58 229.2 247 51.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.2e-57 227.6 241 49.8
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.4e-57 226.1 147 72.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.4e-57 226.1 151 71.5
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.9e-57 225.3 208 54.3
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.7e-57 224.9 241 51.5
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 5.5e-55 218.8 175 59.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.2e-55 218.4 182 59.3
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.2e-54 217.6 172 61.6
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.2e-54 217.6 204 54.9
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.6e-54 216.1 112 97.3
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.8e-53 213.8 228 52.2
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.3e-53 213.4 183 56.8
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-53 212.6 174 62.6
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.6e-52 209.9 185 57.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.6e-52 209.9 188 54.3
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.3e-51 207.6 166 60.2
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.4e-50 204.1 231 47.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.1e-50 202.6 190 52.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.4e-47 194.1 162 61.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.4e-47 194.1 173 54.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-46 190.7 132 65.9
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.1e-42 176.4 185 48.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.1e-42 174.9 147 61.9
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.7e-40 170.6 106 77.4
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.4e-36 156.0 214 39.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.7e-33 146.7 173 42.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 3.2e-31 139.8 206 41.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 6.1e-30 135.6 149 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.4e-28 129.8 206 35.0
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 9.8e-28 128.3 161 41.0
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-24 118.2 74 71.6
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.7e-19 99.8 155 37.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.3e-15 86.7 86 50.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.0e-13 79.7 109 42.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.7e-11 73.2 72 45.8
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 8.0e-06 55.5 51 51.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 8.0e-06 55.5 51 51.0


User provided reference genes

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