Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.7e-55 218.0 114 100.0
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 3.3e-51 204.9 114 93.0
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 7.5e-48 193.7 105 95.2
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 2.3e-41 172.2 114 78.1
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 4.3e-35 151.4 108 72.2
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 2.2e-31 139.0 113 64.6
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 2.9e-31 138.7 115 66.1
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.9e-30 136.0 118 65.3
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 3.2e-30 135.2 110 62.7
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 7.1e-30 134.0 108 59.3
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 7.1e-30 134.0 117 65.0
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 1.6e-29 132.9 115 60.9
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 1.0e-28 130.2 119 61.3
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 1.3e-28 129.8 114 57.9
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 1.3e-28 129.8 115 63.5
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 2.3e-28 129.0 107 59.8
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 3.9e-28 128.3 103 62.1
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 3.9e-28 128.3 96 65.6
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 8.6e-28 127.1 97 66.0
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 8.6e-28 127.1 116 63.8
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 1.9e-27 125.9 118 61.9
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 2.5e-27 125.6 100 64.0
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 3.3e-27 125.2 110 62.7
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 3.3e-27 125.2 116 58.6
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 3.3e-27 125.2 102 60.8
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 5.6e-27 124.4 96 65.6
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 5.6e-27 124.4 108 62.0
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 7.3e-27 124.0 110 61.8
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 7.3e-27 124.0 117 60.7
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 1.2e-26 123.2 100 63.0
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 2.1e-26 122.5 114 57.9
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 2.1e-26 122.5 117 59.8
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 2.1e-26 122.5 65 100.0
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 3.6e-26 121.7 97 64.9
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 4.7e-26 121.3 111 60.4
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 4.7e-26 121.3 99 66.7
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 6.2e-26 120.9 96 63.5
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 8.1e-26 120.6 106 60.4
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 8.9e-25 117.1 96 59.4
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 8.9e-25 117.1 106 56.6
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 2.0e-24 115.9 115 57.4
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 2.6e-24 115.5 92 65.2
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 2.6e-24 115.5 104 61.5
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.3e-23 113.2 113 56.6
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 4.9e-23 111.3 106 58.5
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 1.1e-22 110.2 116 49.1
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 1.1e-22 110.2 98 59.2
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 1.9e-22 109.4 106 54.7
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 4.2e-22 108.2 95 58.9
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 7.1e-22 107.5 95 56.8
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 1.2e-21 106.7 108 51.9
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 4.6e-21 104.8 98 50.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 4.6e-21 104.8 102 54.9
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 6.0e-21 104.4 116 51.7
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 7.8e-21 104.0 112 54.5
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 7.8e-21 104.0 112 54.5
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 7.8e-21 104.0 98 56.1
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 1.7e-20 102.8 104 53.8
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 5.1e-20 101.3 94 58.5
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 6.6e-20 100.9 95 54.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 8.7e-20 100.5 102 54.9
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 8.7e-20 100.5 95 54.7
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 1.9e-19 99.4 109 52.3
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 1.9e-19 99.4 118 50.8
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.9e-19 99.4 95 53.7
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 2.5e-19 99.0 107 53.3
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 4.3e-19 98.2 108 53.7
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 5.6e-19 97.8 110 46.4
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 7.3e-19 97.4 105 53.3
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 7.3e-19 97.4 105 53.3
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 7.3e-19 97.4 105 53.3
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 7.3e-19 97.4 100 49.0
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 9.6e-19 97.1 92 53.3
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 9.6e-19 97.1 85 61.2
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 9.6e-19 97.1 96 53.1
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 2.1e-18 95.9 109 51.4
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 2.8e-18 95.5 117 48.7
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 8.1e-18 94.0 107 52.3
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.8e-17 92.8 92 54.3
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.8e-17 92.8 92 54.3
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 4.0e-17 91.7 93 49.5
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 9.0e-17 90.5 96 52.1
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 2.6e-16 89.0 95 50.5
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 4.5e-16 88.2 95 50.5
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 5.8e-16 87.8 92 51.1
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 9.9e-16 87.0 80 53.8
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 9.9e-16 87.0 80 53.8
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 1.7e-15 86.3 95 51.6
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.9e-15 85.5 80 52.5
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.9e-15 85.5 80 52.5
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 3.8e-15 85.1 109 41.3
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.1e-14 83.6 76 59.2
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 3.2e-14 82.0 82 47.6
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 4.2e-14 81.6 81 50.6
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.2e-13 80.1 111 44.1
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.3e-12 76.6 92 46.7
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 3.9e-12 75.1 96 40.6
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 1.1e-11 73.6 87 44.8
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 3.3e-11 72.0 90 40.0
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 9.0e-09 63.9 84 46.4
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 3.4e-08 62.0 88 39.8
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 7.6e-08 60.8 74 41.9
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 3.8e-07 58.5 65 49.2
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 3.8e-07 58.5 65 49.2
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 1.4e-06 56.6 98 33.7
arahy.Tifrunner.gnm1.ann1.65RZ9M Arachis hypogaea HOM05D007246 ORTHO05D009066 2.4e-06 55.8 68 48.5


User provided reference genes

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