Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2266.1 1156 100.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 2097.8 1156 93.8
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2087.4 1241 88.3
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2068.5 1158 92.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1950.3 1135 89.3
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1865.9 1136 84.2
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1782.3 1138 80.2
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1778.1 1139 80.1
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1777.7 1139 79.9
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1776.1 1136 80.3
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1775.4 1136 79.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1775.0 1139 80.1
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1764.2 1130 79.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1762.3 1134 79.3
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1761.9 1133 79.3
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1756.5 1137 79.4
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1134 79.2
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1133 79.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1130 79.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1735.3 1137 78.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1732.2 1132 78.1
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1730.7 1139 78.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1139 77.8
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1728.0 1135 78.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1716.4 1119 78.8
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1133 77.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1139 77.4
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1709.1 1133 76.6
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1133 77.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1084 80.0
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1701.4 1129 76.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1697.6 1133 76.1
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1696.0 1131 77.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1132 77.5
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1126 75.8
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1693.3 1158 75.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1684.1 1062 79.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1128 76.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1133 75.4
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1134 75.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1125 76.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1091 77.3
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1132 75.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1067 78.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1670.6 1058 78.6
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1668.7 1127 75.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1167 73.8
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1083 77.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1121 75.6
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1121 75.6
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1121 75.7
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1130 75.0
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1131 75.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1125 75.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1067 78.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1125 74.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1129 74.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1140 75.4
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1122 75.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1123 74.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1125 74.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1127 74.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1121 75.0
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1147 73.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1125 75.0
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1130 75.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1121 75.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1651.0 1167 73.1
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1055 77.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1123 75.2
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1122 74.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1128 74.7
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1123 75.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1123 74.9
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1123 75.0
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1121 75.4
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1124 75.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1113 75.5
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1122 75.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1132 73.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1121 74.3
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1217 70.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1124 74.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1121 74.5
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1156 73.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1632.5 1121 74.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1124 74.7
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1132 73.9
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1124 74.2
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1121 74.4
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1153 72.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1624.0 1116 74.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1130 72.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1616.7 1117 73.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1128 72.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1606.3 1213 69.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1151 71.8
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1141 72.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1128 71.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1125 73.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1594.7 1243 67.7
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1120 73.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1126 73.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1136 74.6
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1581.2 1064 74.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1163 69.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 1119 70.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1512.3 997 75.7
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 962 76.6
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1478.8 917 80.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1440.2 1057 69.3
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1426.8 1108 65.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1397.9 1077 64.6
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1382.9 1150 65.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1381.7 1150 65.5
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1347.4 1005 66.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1342.0 831 80.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1297.0 1122 62.2
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1290.0 771 85.6
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1266.9 1066 61.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1197.2 864 70.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1163.3 776 75.8
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1143.6 750 77.1
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1106.3 1063 52.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1105.9 1127 52.4
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.5e-310 1068.5 1036 53.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.2e-303 1045.4 767 69.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.1e-302 1042.7 929 60.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 9.0e-274 947.6 892 57.8
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.9e-263 913.3 602 74.3
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.1e-261 905.2 805 57.6
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.4e-258 896.3 624 74.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.4e-234 815.5 1022 43.2
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.4e-210 737.6 670 59.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.4e-210 736.9 699 54.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.6e-204 716.8 759 51.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.4e-196 689.5 460 76.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 8.7e-184 648.7 504 69.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.9e-179 633.6 436 74.5
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.4e-178 630.6 525 64.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.0e-177 625.9 413 75.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.5e-167 594.0 496 66.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 3.1e-165 587.0 347 86.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 6.5e-163 579.3 311 96.5
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.5e-159 567.4 1051 37.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.1e-151 542.0 421 62.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 5.0e-131 473.4 403 63.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.5e-130 471.9 424 60.4
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.1e-125 452.6 351 65.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.9e-123 447.6 337 65.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.0e-104 386.0 1039 29.1
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.5e-100 370.9 1008 28.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.5e-98 365.5 255 72.9
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.0e-95 355.1 1006 27.4
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-89 335.1 949 29.1
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.1e-77 293.5 173 80.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-62 244.6 217 58.5
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.6e-57 228.0 310 44.8
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 9.9e-55 219.9 879 23.5
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.7e-46 192.6 220 55.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.9e-45 189.1 363 30.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-42 179.1 170 54.7
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.9e-42 179.1 174 54.0
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.5e-42 178.7 154 64.3
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.3e-42 178.3 124 71.8
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.3e-38 166.4 293 36.9
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.4e-37 162.9 163 54.6
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.7e-36 158.7 135 63.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 8.7e-35 153.7 485 26.6
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 8.2e-33 147.1 162 44.4
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.4e-27 129.8 103 60.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 5.1e-27 127.9 449 26.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.3e-25 123.2 157 50.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 8.2e-25 120.6 99 63.6
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.3e-19 102.4 305 23.9
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.1e-16 90.5 83 62.7
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.2e-15 90.1 80 58.8
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.1e-12 79.3 56 67.9
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 4.0e-11 75.1 45 77.8
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.0e-10 72.8 51 64.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.8e-08 66.2 36 83.3
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 2.4e-08 65.9 77 49.4
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.3e-08 64.7 171 38.0


User provided reference genes

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