Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.5e-103 377.9 183 100.0
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.0e-99 366.7 183 96.7
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.5e-98 362.8 183 96.7
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 4.2e-85 318.2 178 84.8
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 2.7e-79 298.9 189 77.2
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.7e-78 296.2 191 77.0
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.3e-75 285.8 188 73.4
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.8e-72 276.2 187 68.4
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 3.5e-71 271.9 189 68.3
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 6.0e-71 271.2 189 68.8
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 7.8e-71 270.8 189 68.8
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 5.0e-70 268.1 191 67.0
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 8.6e-70 267.3 188 66.5
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.5e-69 266.5 191 67.0
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.9e-69 266.2 188 66.0
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 4.3e-69 265.0 192 65.6
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 7.3e-69 264.2 187 67.9
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 3.6e-68 261.9 183 68.9
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 3.6e-68 261.9 188 66.5
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 6.2e-68 261.2 191 65.4
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.1e-67 260.4 188 65.4
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 1.4e-67 260.0 183 68.3
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 3.1e-67 258.8 191 66.5
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 4.0e-67 258.5 194 66.5
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 5.2e-67 258.1 186 66.1
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.8e-67 257.7 184 66.8
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 4.4e-66 255.0 179 67.0
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 4.4e-66 255.0 177 67.8
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 7.5e-66 254.2 177 67.2
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.5e-66 254.2 188 64.4
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 9.8e-66 253.8 193 64.8
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.3e-65 253.4 176 65.3
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.3e-65 253.4 169 66.9
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.3e-65 253.4 194 62.4
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.7e-65 253.1 190 62.1
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.9e-65 252.3 177 65.5
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 6.4e-65 251.1 188 67.6
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.4e-65 251.1 188 62.8
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 8.3e-65 250.8 184 66.3
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.1e-64 250.4 166 69.9
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.1e-64 250.4 193 62.2
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.4e-64 250.0 186 62.9
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 4.1e-64 248.4 178 63.5
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 5.4e-64 248.1 176 64.2
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.0e-64 247.7 176 64.2
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.0e-63 246.1 193 62.7
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.0e-63 246.1 185 62.7
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-63 246.1 189 60.8
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 2.7e-63 245.7 186 62.4
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 4.6e-63 245.0 165 67.3
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 6.0e-63 244.6 195 61.5
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.0e-62 243.8 154 72.1
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 1.3e-62 243.4 174 64.4
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.7e-62 243.0 194 61.9
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 2.3e-62 242.7 185 61.6
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 2.3e-62 242.7 180 61.7
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 5.0e-62 241.5 166 66.3
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 6.6e-62 241.1 176 67.6
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.1e-61 240.4 189 63.0
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.1e-61 240.4 181 63.0
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.1e-61 240.4 181 63.0
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 1.9e-61 239.6 170 67.6
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 4.3e-61 238.4 189 60.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 4.3e-61 238.4 181 60.8
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 9.5e-61 237.3 182 62.6
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.6e-60 236.5 182 62.6
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 3.6e-60 235.3 181 63.0
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 3.6e-60 235.3 178 61.2
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 8.1e-60 234.2 181 63.0
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.1e-59 233.8 183 61.2
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.1e-59 233.8 167 65.9
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.1e-59 233.8 155 68.4
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.4e-59 233.4 181 63.0
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 1.8e-59 233.0 188 60.6
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.3e-59 232.6 181 61.9
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.3e-59 232.6 173 63.0
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 4.0e-59 231.9 181 62.4
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.2e-59 231.5 165 64.8
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 6.8e-59 231.1 182 62.6
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 6.8e-59 231.1 177 61.6
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 8.9e-59 230.7 150 68.0
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.2e-58 230.3 173 60.7
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.5e-58 229.9 182 62.1
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.5e-58 229.9 182 62.1
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.5e-58 229.9 173 64.2
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.0e-58 229.6 181 61.3
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 4.4e-58 228.4 159 63.5
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 4.4e-58 228.4 166 60.8
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 5.8e-58 228.0 181 62.4
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.8e-58 228.0 170 61.8
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 5.8e-58 228.0 150 66.7
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.7e-57 225.3 159 62.3
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.7e-57 225.3 150 66.7
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 4.9e-57 224.9 181 59.1
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 6.4e-57 224.6 159 62.3
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.4e-56 223.4 186 57.5
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 4.1e-56 221.9 190 55.8
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 5.4e-56 221.5 185 55.1
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 9.2e-56 220.7 182 61.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.6e-55 219.9 154 65.6
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 4.6e-55 218.4 194 54.1
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.0e-54 215.7 148 65.5
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 5.1e-54 214.9 207 54.6
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 6.6e-54 214.5 164 58.5
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.1e-51 207.2 101 96.0
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 3.8e-49 198.7 151 60.3
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 3.5e-47 192.2 159 56.6
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 1.0e-46 190.7 152 62.5
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 5.1e-46 188.3 156 55.8
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 3.3e-45 185.7 166 53.6
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 5.6e-45 184.9 187 51.3
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 8.1e-44 181.0 187 51.3
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 9.0e-43 177.6 159 52.2
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.0e-43 177.6 158 50.6
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.0e-43 177.6 158 50.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.9e-42 174.1 150 52.7
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.2e-39 167.2 113 68.1
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 3.5e-39 165.6 146 58.2
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 8.7e-38 161.0 115 67.0
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.0e-34 149.8 128 60.9
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 7.1e-32 141.4 123 60.2
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 2.5e-29 132.9 116 58.6
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.5e-26 123.6 158 38.6
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 7.1e-24 114.8 70 71.4
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 1.8e-22 110.2 76 67.1
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 4.3e-21 105.5 85 57.6
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 3.7e-20 102.4 145 35.2
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.4e-19 100.5 71 62.0
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 3.1e-19 99.4 80 57.5
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 6.9e-19 98.2 67 65.7
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.0e-18 96.7 112 45.5
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.1e-15 86.7 144 29.9
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 1.5e-13 80.5 45 71.1
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.1e-11 74.3 68 52.9
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.1e-11 72.8 143 24.5
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 2.2e-09 66.6 60 58.3


User provided reference genes

Program Settings