Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.4e-238 827.0 419 100.0
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.1e-232 809.7 419 98.3
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 5.3e-232 807.4 419 97.6
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.3e-232 807.4 419 97.6
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 4.6e-220 767.7 419 93.6
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 2.0e-207 725.7 420 87.9
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 4.2e-197 691.4 419 82.8
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 7.5e-194 680.6 421 82.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.3e-193 679.9 421 82.2
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 3.7e-193 678.3 420 81.9
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 2.0e-191 672.5 418 80.9
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.7e-191 672.2 419 80.2
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 4.5e-191 671.4 419 80.4
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 7.7e-191 670.6 419 80.2
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.0e-190 670.2 420 80.0
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 8.5e-190 667.2 415 80.0
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.5e-189 666.4 421 79.6
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 2.5e-189 665.6 418 81.1
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 4.2e-189 664.8 419 80.4
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.7e-188 662.1 422 78.4
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.4e-187 659.8 420 79.5
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.4e-187 659.8 419 78.8
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 6.8e-187 657.5 419 80.4
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 6.8e-187 657.5 421 78.1
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.2e-186 656.8 420 77.9
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 5.7e-186 654.4 419 79.2
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.7e-185 652.9 419 78.8
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.7e-185 652.9 418 79.2
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 3.7e-185 651.7 431 76.6
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.4e-184 649.8 419 76.6
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 3.1e-184 648.7 421 77.4
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 7.0e-184 647.5 421 76.7
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 4.5e-183 644.8 420 76.0
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.3e-182 643.3 419 75.9
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 2.2e-182 642.5 424 75.7
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 8.5e-182 640.6 418 76.8
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 8.5e-182 640.6 419 75.4
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 8.5e-182 640.6 422 76.8
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.2e-180 636.7 417 75.5
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.2e-180 636.7 422 76.3
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 3.6e-180 635.2 422 75.4
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 1.4e-179 633.3 370 83.8
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 4.0e-179 631.7 424 75.2
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 4.0e-179 631.7 419 74.9
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.5e-178 629.8 422 76.5
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.5e-178 629.8 458 70.3
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.6e-178 629.0 415 76.4
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 1.7e-177 626.3 421 74.6
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.8e-177 625.5 419 76.1
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 3.7e-177 625.2 420 75.5
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 8.3e-177 624.0 424 74.3
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 7.0e-176 620.9 414 75.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 7.0e-176 620.9 413 74.8
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 3.5e-175 618.6 365 81.9
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.3e-174 616.7 379 78.9
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 5.0e-174 614.8 379 79.2
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 4.3e-173 611.7 344 85.8
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.3e-173 610.9 343 84.3
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.2e-172 610.1 427 73.8
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.6e-172 609.8 373 78.0
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 2.8e-172 609.0 415 73.5
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 6.8e-171 604.4 413 74.1
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.4e-170 602.1 394 78.9
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 7.5e-170 600.9 350 84.6
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.7e-169 599.7 359 80.8
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 7.0e-168 594.3 424 73.1
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.3e-166 590.1 420 72.6
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 6.6e-166 587.8 371 77.4
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 6.6e-166 587.8 371 77.4
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 2.5e-165 585.9 370 77.0
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 2.8e-164 582.4 416 71.4
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 6.2e-164 581.3 419 69.9
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.4e-163 580.1 424 71.2
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.8e-163 579.7 414 69.6
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 4.0e-163 578.6 418 68.4
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 2.0e-162 576.2 352 78.4
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 7.5e-162 574.3 425 68.2
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 2.2e-161 572.8 425 68.2
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 2.2e-161 572.8 419 68.5
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 6.4e-161 571.2 413 69.0
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 8.3e-161 570.9 415 68.7
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 7.0e-160 567.8 343 79.3
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 6.0e-159 564.7 387 72.6
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.7e-158 563.1 413 69.2
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 8.6e-158 560.8 392 70.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.9e-157 559.7 422 70.9
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.1e-155 553.9 370 74.1
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 6.8e-155 551.2 407 69.8
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 2.0e-154 549.7 416 68.3
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 3.4e-154 548.9 320 82.5
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 8.3e-153 544.3 336 78.0
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.2e-151 540.4 381 69.8
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 3.0e-150 535.8 370 71.1
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 3.0e-150 535.8 299 86.3
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 6.6e-150 534.6 396 66.7
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 2.1e-148 529.6 369 70.7
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 4.7e-148 528.5 346 78.3
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 8.1e-148 527.7 366 74.9
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.4e-147 526.9 377 69.5
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 6.0e-143 511.5 360 68.9
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 1.5e-141 506.9 442 62.7
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 1.4e-139 500.4 301 85.7
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 4.4e-138 495.4 350 67.7
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.2e-135 487.3 297 80.1
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 5.1e-134 481.9 358 68.7
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.3e-133 479.2 420 61.7
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.5e-125 453.8 354 62.4
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 9.0e-123 444.5 254 83.5
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 2.1e-119 433.3 351 59.3
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 4.6e-119 432.2 374 57.0
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.2e-104 382.5 213 87.8
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.0e-93 347.1 203 81.8
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 8.2e-92 341.7 261 69.0
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 3.9e-86 322.8 219 73.5
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 4.4e-77 292.7 204 68.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 2.5e-64 250.4 274 47.8
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 2.4e-51 207.2 377 36.9
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 4.0e-46 189.9 123 81.3
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 8.9e-46 188.7 246 45.9
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.2e-42 178.3 149 61.1
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 2.4e-35 154.1 101 72.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.1e-32 145.2 85 76.5
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.4e-27 128.3 74 81.1
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 1.4e-27 128.3 165 44.2
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 9.2e-27 125.6 74 78.4
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.0e-25 120.6 128 55.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.9e-25 120.2 128 54.7
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.7e-17 94.7 74 70.3
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-14 84.3 44 86.4
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 2.2e-12 77.8 100 42.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 3.8e-12 77.0 110 47.3
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.0e-09 68.9 93 45.2
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.0e-09 68.9 45 68.9
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.6e-08 63.2 59 61.0
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 3.1e-06 57.4 37 78.4


User provided reference genes

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