Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0044 Fragaria x ananassa HOM05D007327 ORTHO05D009342 1.7e-251 872.1 419 100.0
FAN24G0347 Fragaria x ananassa HOM05D007327 ORTHO05D009342 3.2e-245 851.3 418 97.6
FvH4_2g13700 Fragaria vesca HOM05D007327 ORTHO05D009342 1.3e-198 696.4 419 83.1
RcHm_v2.0_Chr6g0275381 Rosa chinensis HOM05D007327 ORTHO05D009342 2.2e-185 652.5 416 78.1
Prupe.8G031100 Prunus persica HOM05D007327 ORTHO05D009342 3.4e-170 602.1 416 71.6
MD05G1026600 Malus domestica HOM05D007327 ORTHO05D009342 4.4e-162 575.1 416 68.3
Cfa018321 Carpinus fangiana HOM05D007327 ORTHO05D009342 3.4e-154 548.9 416 65.4
Dinv25868 Davidia involucrata HOM05D007327 ORTHO05D009342 4.9e-153 545.0 424 63.2
Hma1.2p1_0105F.1_g050650 Hydrangea macrophylla HOM05D007327 ORTHO05D009342 4.1e-152 542.0 415 63.9
Manes.18G092400 Manihot esculenta HOM05D007327 ORTHO05D009342 6.0e-151 538.1 417 63.3
Actinidia17791 Actinidia chinensis HOM05D007327 ORTHO05D009342 1.7e-150 536.6 415 62.4
TAR628G0726 Trochodendron aralioides HOM05D007327 ORTHO05D009342 3.0e-150 535.8 419 63.2
CANSAT25G1895 Cannabis sativa HOM05D007327 ORTHO05D009342 1.9e-149 533.1 416 63.5
GSVIVG01034535001 Vitis vinifera HOM05D007327 ORTHO05D009342 2.5e-149 532.7 415 64.3
CsaV3_6G005130 Cucumis sativus L. HOM05D007327 ORTHO05D009342 9.5e-149 530.8 415 61.4
MELO3C029831.2 Cucumis melo HOM05D007327 ORTHO05D009342 2.8e-148 529.3 415 61.2
TWI60G1090 Tripterygium wilfordii HOM05D007327 ORTHO05D009342 4.4e-146 521.9 415 61.0
CSS0015629 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.8e-146 521.5 415 61.9
Nn5g28751 Nelumbo nucifera HOM05D007327 ORTHO05D009342 1.3e-145 520.4 417 59.2
HanXRQChr04g0108941 Helianthus annuus HOM05D007327 ORTHO05D009342 2.2e-145 519.6 416 60.3
Gohir.D01G089200 Gossypium hirsutum HOM05D007327 ORTHO05D009342 2.4e-144 516.2 415 60.7
ECA247G1449 Erigeron canadensis HOM05D007327 ORTHO05D009342 4.1e-144 515.4 417 60.2
QL02p039069 Quercus lobata HOM05D007327 ORTHO05D009342 5.4e-144 515.0 515 53.8
CiPaw.15G016000 Carya illinoinensis HOM05D007327 ORTHO05D009342 7.1e-144 514.6 394 64.5
Lsat_1_v5_gn_1_6021 Lactuca sativa HOM05D007327 ORTHO05D009342 7.1e-144 514.6 414 59.7
Gorai.002G114900 Gossypium raimondii HOM05D007327 ORTHO05D009342 1.2e-143 513.8 415 60.5
COL.COLO4_08563 Corchorus olitorius HOM05D007327 ORTHO05D009342 1.6e-143 513.5 415 60.2
Eucgr.F04237 Eucalyptus grandis HOM05D007327 ORTHO05D009342 1.6e-143 513.5 418 60.5
Sed0007638 Sechium edule HOM05D007327 ORTHO05D009342 2.7e-143 512.7 417 59.7
Thecc.08G153100 Theobroma cacao HOM05D007327 ORTHO05D009342 1.7e-142 510.0 415 60.0
Atru.chr13.2102 Acer truncatum HOM05D007327 ORTHO05D009342 8.6e-142 507.7 416 60.6
Ciclev10001558m.g Citrus clementina HOM05D007327 ORTHO05D009342 1.1e-141 507.3 417 60.7
Gohir.A01G103900 Gossypium hirsutum HOM05D007327 ORTHO05D009342 1.9e-141 506.5 415 59.8
Psat1g101680 Pisum sativum HOM05D007327 ORTHO05D009342 4.3e-141 505.4 415 58.8
Glyma.02G081500 Glycine max HOM05D007327 ORTHO05D009342 4.0e-139 498.8 415 60.2
Oeu051268.1 Olea europaea HOM05D007327 ORTHO05D009342 1.2e-138 497.3 448 56.7
Peaxi162Scf00599g00511 Petunia axillaris HOM05D007327 ORTHO05D009342 2.0e-138 496.5 414 57.7
Solyc04g071470.3 Solanum lycopersicum HOM05D007327 ORTHO05D009342 5.8e-138 495.0 415 57.3
Potri.002G067900 Populus trichocarpa HOM05D007327 ORTHO05D009342 7.6e-138 494.6 415 60.0
Sopen04g027430 Solanum pennellii HOM05D007327 ORTHO05D009342 2.9e-137 492.7 415 57.3
Haze_17755 Corylus avellana HOM05D007327 ORTHO05D009342 2.4e-136 489.6 510 52.9
arahy.Tifrunner.gnm1.ann1.S2I56E Arachis hypogaea HOM05D007327 ORTHO05D009342 1.1e-133 480.7 416 57.5
Lalb_Chr19g0130241 Lupinus albus HOM05D007327 ORTHO05D009342 4.3e-133 478.8 417 58.3
PSO541G6301 Papaver somniferum HOM05D007327 ORTHO05D009342 5.6e-133 478.4 418 56.7
arahy.Tifrunner.gnm1.ann1.LUB646 Arachis hypogaea HOM05D007327 ORTHO05D009342 8.1e-132 474.6 416 57.0
Medtr6g036750 Medicago truncatula HOM05D007327 ORTHO05D009342 8.1e-132 474.6 415 56.4
TPR.G31184 Trifolium pratense HOM05D007327 ORTHO05D009342 1.8e-131 473.4 416 55.5
Nitab4.5_0002452g0030 Nicotiana tabacum HOM05D007327 ORTHO05D009342 2.0e-130 469.9 428 54.9
ATR0582G033 Amborella trichopoda HOM05D007327 ORTHO05D009342 3.4e-130 469.2 416 54.3
Phvul.004G094900 Phaseolus vulgaris HOM05D007327 ORTHO05D009342 5.8e-130 468.4 415 57.6
Lj2g0012645 Lotus japonicus HOM05D007327 ORTHO05D009342 1.3e-129 467.2 416 57.9
SGA_v2.0_scaffold24G10336 Striga asiatica HOM05D007327 ORTHO05D009342 1.4e-128 463.8 417 56.1
Os01g0867200 Oryza sativa ssp. japonica HOM05D007327 ORTHO05D009342 2.4e-128 463.0 416 54.3
HPP92_000065 Vanilla planifolia HOM05D007327 ORTHO05D009342 4.2e-128 462.2 416 53.6
Aqoxy6G00379 Aquilegia oxysepala HOM05D007327 ORTHO05D009342 3.5e-127 459.1 384 58.1
Zm00001eb146700 Zea mays HOM05D007327 ORTHO05D009342 7.4e-125 451.4 421 53.4
Duzib093G0512 Durio zibethinus HOM05D007327 ORTHO05D009342 1.1e-123 447.6 415 55.7
PGR044G2476 Punica granatum HOM05D007327 ORTHO05D009342 1.2e-122 444.1 418 54.1
PGR100G0004 Punica granatum HOM05D007327 ORTHO05D009342 1.2e-122 444.1 418 54.1
PGR080G0004 Punica granatum HOM05D007327 ORTHO05D009342 2.6e-122 443.0 418 53.8
PSO675G1203 Papaver somniferum HOM05D007327 ORTHO05D009342 7.1e-120 434.9 418 52.6
ClCG08G007070 Citrullus lanatus HOM05D007327 ORTHO05D009342 2.3e-118 429.9 520 45.8
Hund26695 Selenicereus undatus HOM05D007327 ORTHO05D009342 4.9e-113 412.1 418 51.9
Cc10_g14850 Coffea canephora HOM05D007327 ORTHO05D009342 1.3e-100 370.9 350 55.1
Glyma.16G166900 Glycine max HOM05D007327 ORTHO05D009342 3.9e-86 322.8 189 77.2
Pp3c20_20940 Physcomitrium patens HOM05D007327 ORTHO05D009342 1.1e-85 321.2 421 40.6
Sabra02G0053500 Salix brachista HOM05D007327 ORTHO05D009342 1.3e-84 317.8 229 66.8
unitig_26.g9897 Utricularia gibba HOM05D007327 ORTHO05D009342 6.3e-84 315.5 353 49.3
SalBow7G2928 Salvia bowleyana HOM05D007327 ORTHO05D009342 7.0e-83 312.0 375 48.8
SMO335G0004 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.3e-76 291.2 422 37.7
Ca_25918_v3 Cicer arietinum L. HOM05D007327 ORTHO05D009342 4.8e-76 289.3 261 56.7
DCAR_010093 Daucus carota HOM05D007327 ORTHO05D009342 7.7e-66 255.4 162 71.6
VMungo0464G2010 Vigna mungo HOM05D007327 ORTHO05D009342 6.5e-65 252.3 279 50.5
Migut.C00996 Erythranthe guttata HOM05D007327 ORTHO05D009342 4.7e-63 246.1 147 73.5
SHI09061 Sapria himalayana HOM05D007327 ORTHO05D009342 3.3e-56 223.4 313 42.5
Cpa.g.sc21.198 Carica papaya HOM05D007327 ORTHO05D009342 6.4e-52 209.1 160 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2825 Anthoceros agrestis HOM05D007327 ORTHO05D009342 1.6e-50 204.5 299 38.8
SMO228G0199 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.6e-47 194.5 421 29.9
Cc00_g31580 Coffea canephora HOM05D007327 ORTHO05D009342 2.9e-44 183.7 204 48.5
Cpa.g.c33136.2 Carica papaya HOM05D007327 ORTHO05D009342 1.5e-40 171.4 104 75.0
Glyma.16G166950 Glycine max HOM05D007327 ORTHO05D009342 3.3e-40 170.2 128 66.4
MCO03G524 Micromonas commoda HOM05D007327 ORTHO05D009342 8.3e-36 155.6 459 26.6
MBI17_g33117_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 2.0e-29 134.4 71 80.3
SalBow7G1135 Salvia bowleyana HOM05D007327 ORTHO05D009342 2.0e-29 134.4 103 66.0
CDE02G1931 Ceratophyllum demersum HOM05D007327 ORTHO05D009342 5.8e-29 132.9 70 81.4
PRCOL_00001255 Prasinoderma coloniale HOM05D007327 ORTHO05D009342 1.3e-28 131.7 209 37.3
MBI17_g25900_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 8.4e-28 129.0 102 59.8
Cc07_g11820 Coffea canephora HOM05D007327 ORTHO05D009342 2.4e-27 127.5 70 74.3
Cc10_g14400 Coffea canephora HOM05D007327 ORTHO05D009342 2.4e-27 127.5 70 74.3
MBI17_g33124_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 6.0e-26 122.9 114 55.3
SEGI_20996 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 1.0e-25 122.1 101 54.5
CSS0013095 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 4.7e-23 113.2 67 80.6
CSS0040121 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 4.7e-23 113.2 67 80.6
CSS0009897 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.2e-23 112.8 67 79.1
CSS0048751 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.9e-22 109.4 64 81.2
SEGI_01400 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 4.4e-21 106.7 187 33.2
HPP92_000064 Vanilla planifolia HOM05D007327 ORTHO05D009342 1.4e-19 101.7 75 60.0
Cre12.g548350 Chlamydomonas reinhardtii HOM05D007327 ORTHO05D009342 3.2e-19 100.5 342 24.9
CSS0014849 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.1e-17 93.2 144 41.0
MBI09_g12042_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 3.3e-16 90.5 50 72.0
Actinidia27255 Actinidia chinensis HOM05D007327 ORTHO05D009342 3.1e-14 84.0 57 64.9
MBI17_g33120_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 4.0e-14 83.6 102 41.2
SEGI_01531 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 2.9e-12 77.4 50 66.0
arahy.Tifrunner.gnm1.ann1.DQ97IN Arachis hypogaea HOM05D007327 ORTHO05D009342 6.0e-10 69.7 98 44.9
arahy.Tifrunner.gnm1.ann1.KIIE1S Arachis hypogaea HOM05D000198 ORTHO05D003365 7.9e-10 69.3 62 56.5
PSO541G3507 Papaver somniferum HOM05D000022 ORTHO05D000071 8.7e-09 65.9 124 33.1
arahy.Tifrunner.gnm1.ann1.B7BSQF Arachis hypogaea HOM05D000002 ORTHO05D000047 1.3e-07 62.0 94 39.4


User provided reference genes

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