Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.8e-298 1026.2 512 100.0
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.4e-295 1018.1 512 99.2
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-294 1015.0 512 99.0
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.2e-292 1007.3 517 97.9
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.5e-292 1006.9 512 98.4
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 5.7e-289 996.9 512 97.1
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.2e-267 926.0 512 90.4
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 8.1e-259 896.7 511 86.3
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.8e-256 887.9 512 85.5
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.3e-253 879.4 489 89.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 5.6e-252 874.0 489 88.1
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 6.2e-251 870.5 518 82.6
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 6.4e-248 860.5 511 83.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.9e-247 859.0 511 83.6
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.7e-246 855.1 514 82.1
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 6.6e-245 850.5 511 81.8
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 6.6e-245 850.5 511 81.4
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.1e-244 849.7 511 83.0
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.1e-242 843.2 511 81.4
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 3.1e-242 841.6 511 81.8
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 5.3e-242 840.9 516 80.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 6.9e-242 840.5 516 79.7
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 2.0e-241 839.0 479 85.6
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 5.8e-241 837.4 511 81.2
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 5.8e-241 837.4 511 81.0
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.7e-240 835.9 516 79.5
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.4e-239 832.8 511 80.6
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.4e-239 832.8 511 80.4
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-239 832.0 524 78.8
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 5.5e-239 830.9 520 79.0
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 7.1e-239 830.5 524 78.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.2e-238 829.7 511 80.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 6.0e-238 827.4 518 78.0
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 6.0e-238 827.4 520 78.7
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.0e-237 826.6 518 79.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.3e-235 819.7 517 78.3
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.6e-235 819.3 518 77.6
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 8.1e-235 817.0 510 79.4
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.8e-234 815.8 511 79.5
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 3.1e-234 815.1 512 79.5
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 4.0e-234 814.7 511 78.9
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 5.3e-234 814.3 519 76.9
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 6.9e-234 813.9 512 77.9
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.2e-233 813.1 511 78.9
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.0e-233 812.4 516 78.1
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-232 809.7 512 79.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 2.2e-232 808.9 511 78.7
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 2.2e-232 808.9 506 78.3
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 3.8e-232 808.1 516 76.6
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.1e-231 806.6 511 78.5
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.1e-231 803.9 523 76.7
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 9.3e-231 803.5 516 77.7
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.2e-230 803.1 511 78.1
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 4.6e-230 801.2 518 78.2
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 6.0e-230 800.8 518 78.2
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.8e-229 799.3 517 76.8
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.3e-229 798.9 511 77.7
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 8.7e-229 797.0 512 77.7
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 7.4e-228 793.9 487 79.9
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.4e-228 793.9 519 76.3
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 9.6e-228 793.5 510 77.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.4e-226 789.6 518 75.5
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.4e-226 789.6 520 74.6
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.6e-225 783.9 511 75.7
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 7.6e-225 783.9 511 75.7
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.9e-224 781.9 508 77.2
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.8e-224 781.6 515 75.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.4e-223 779.6 511 75.9
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 9.3e-223 776.9 511 75.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.1e-222 775.8 515 73.6
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.5e-222 775.0 513 75.8
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 4.6e-222 774.6 511 75.1
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 6.1e-222 774.2 511 75.7
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.0e-221 773.5 512 74.8
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-221 773.1 469 79.1
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.8e-221 772.7 512 75.2
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.9e-221 771.5 519 73.8
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 6.7e-221 770.8 511 75.5
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.7e-221 770.4 548 71.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-220 769.6 511 75.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.3e-220 768.5 511 75.7
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 3.3e-220 768.5 512 74.6
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 2.2e-219 765.8 512 74.6
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 3.7e-219 765.0 475 79.4
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.8e-218 762.7 474 80.2
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 4.1e-218 761.5 510 74.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 5.3e-218 761.1 511 74.0
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 5.3e-218 761.1 475 79.2
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.2e-217 760.0 510 74.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 5.9e-217 757.7 521 72.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.0e-216 756.9 510 73.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 3.2e-215 751.9 481 79.2
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 9.4e-215 750.4 519 71.5
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 9.4e-215 750.4 519 73.2
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-214 749.2 504 73.0
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-214 749.2 504 73.0
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.9e-214 747.3 598 64.5
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.4e-213 746.5 487 76.2
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.3e-213 745.7 515 71.1
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.3e-213 745.7 519 70.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.9e-213 745.0 512 71.1
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 5.1e-213 744.6 512 71.9
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 2.0e-212 742.7 511 72.8
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.5e-212 742.3 520 71.2
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.7e-211 739.6 508 73.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.8e-211 738.8 511 72.2
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.8e-211 738.8 463 78.2
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 9.1e-210 733.8 518 70.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 5.9e-209 731.1 519 69.6
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.7e-208 729.6 518 70.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 3.8e-208 728.4 493 73.6
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.8e-208 728.4 519 69.9
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.1e-207 726.9 476 76.3
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 5.1e-205 718.0 511 71.8
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.3e-203 713.4 408 84.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 3.6e-198 695.3 510 71.2
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.5e-196 689.9 474 73.0
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-193 679.5 525 68.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 5.0e-192 674.9 519 66.1
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.5e-191 672.5 402 79.4
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 3.2e-183 645.6 520 62.3
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 3.6e-182 642.1 524 62.2
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.7e-176 623.2 486 64.4
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.2e-174 617.1 522 61.7
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 6.1e-174 614.8 526 61.0
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-162 577.0 511 62.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.4e-162 576.2 496 61.3
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 5.8e-156 555.1 527 55.2
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.7e-152 543.5 524 53.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 9.5e-151 537.7 417 69.1
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 6.2e-150 535.0 393 70.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-145 520.0 354 75.7
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.0e-144 517.7 333 77.8
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.4e-141 506.5 478 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.4e-140 502.7 553 49.7
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 4.2e-138 495.7 375 68.0
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 8.1e-134 481.5 539 48.8
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.2e-131 473.4 517 49.7
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.8e-126 455.7 389 64.8
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 6.3e-102 375.6 308 58.1
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.4e-101 374.4 530 41.1
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.1e-101 373.2 505 45.0
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-85 321.2 282 62.4
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 9.8e-71 271.9 165 83.0
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.0e-64 251.9 309 49.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.1e-58 231.9 459 31.4
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.5e-58 231.5 220 57.7
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.5e-50 204.9 529 31.6
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 4.0e-48 196.8 434 32.3
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.9e-45 188.0 111 83.8
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.6e-44 184.9 91 93.4
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.0e-43 182.2 98 83.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.0e-43 182.2 351 35.3
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.3e-42 177.2 169 55.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.8e-41 174.1 118 72.0
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.4e-40 171.8 435 30.3
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-39 168.3 157 57.3
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 6.0e-36 156.4 110 74.5
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 2.5e-34 151.0 122 69.7
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.8e-24 118.2 86 61.6
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 3.9e-19 100.5 164 37.8
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 3.8e-14 84.0 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-13 81.6 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.0e-11 75.9 45 77.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.9e-10 71.6 37 83.8
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 2.8e-09 67.8 360 20.8
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 6.2e-09 66.6 57 57.9
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 6.2e-09 66.6 33 84.8
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.6e-07 61.2 288 21.9
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 6.4e-06 56.6 186 24.7


User provided reference genes

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