Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5954 Fragaria x ananassa HOM05D019495 ORTHO05D046160 4.4e-134 481.5 278 100.0
FvH4_6g13680 Fragaria vesca HOM05D019495 ORTHO05D046160 3.2e-132 475.3 283 98.2
FAN05G4430 Fragaria x ananassa HOM05D019495 ORTHO05D206207 4.4e-102 375.2 263 82.5
FAN02G1228 Fragaria x ananassa HOM05D019495 ORTHO05D205465 1.3e-77 293.9 275 61.8
FAN09G0063 Fragaria x ananassa HOM05D019495 ORTHO05D208359 5.5e-52 208.8 113 93.8
FAN09G3631 Fragaria x ananassa HOM05D001009 ORTHO05D000829 6.0e-14 82.4 282 30.5
Lj1g0004447 Lotus japonicus HOM05D001009 ORTHO05D000829 6.0e-14 82.4 214 30.4
Sed0007137 Sechium edule HOM05D001009 ORTHO05D000829 1.3e-13 81.3 258 28.3
Phvul.008G115200 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 3.0e-13 80.1 256 29.7
FAN14G5558 Fragaria x ananassa HOM05D001009 ORTHO05D000829 1.1e-12 78.2 218 32.1
Lalb_Chr19g0125151 Lupinus albus HOM05D001009 ORTHO05D000829 1.1e-12 78.2 210 27.1
TPR.G27325 Trifolium pratense HOM05D001009 ORTHO05D000829 1.1e-12 78.2 262 28.6
Psat3g135840 Pisum sativum HOM05D001009 ORTHO05D000829 1.5e-12 77.8 263 27.4
ClCG10G021440 Citrullus lanatus HOM05D001009 ORTHO05D000829 2.5e-12 77.0 215 34.4
Glyma.18G187800 Glycine max HOM05D001009 ORTHO05D000829 2.5e-12 77.0 264 27.7
RcHm_v2.0_Chr3g0465131 Rosa chinensis HOM05D001009 ORTHO05D000829 3.3e-12 76.6 211 28.0
Medtr7g063520 Medicago truncatula HOM05D001009 ORTHO05D000829 4.3e-12 76.3 211 28.0
Sed0001214 Sechium edule HOM05D001009 ORTHO05D000829 7.3e-12 75.5 215 29.8
FvH4_6g13000 Fragaria vesca HOM05D001009 ORTHO05D000829 9.5e-12 75.1 218 32.6
Lalb_Chr03g0042541 Lupinus albus HOM05D001009 ORTHO05D000829 1.2e-11 74.7 244 25.8
arahy.Tifrunner.gnm1.ann1.W9PXM2 Arachis hypogaea HOM05D001009 ORTHO05D000829 1.6e-11 74.3 257 28.4
arahy.Tifrunner.gnm1.ann1.H18GF1 Arachis hypogaea HOM05D001009 ORTHO05D000829 2.1e-11 73.9 257 28.4
Glyma.07G137100 Glycine max HOM05D001009 ORTHO05D000829 2.8e-11 73.6 231 31.2
VMungo1383G3310 Vigna mungo HOM05D001009 ORTHO05D000829 4.7e-11 72.8 205 28.3
Duzib114G0353 Durio zibethinus HOM05D001009 ORTHO05D000829 8.0e-11 72.0 212 29.7
Carub.0006s0090 Capsella rubella HOM05D001009 ORTHO05D000829 1.4e-10 71.2 220 28.6
Thecc.10G034700 Theobroma cacao HOM05D001009 ORTHO05D000829 1.4e-10 71.2 214 29.0
Ciclev10012447m.g Citrus clementina HOM05D001009 ORTHO05D000829 2.3e-10 70.5 212 28.8
AL6G11270 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 3.1e-10 70.1 220 27.7
CSS0002250 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 3.1e-10 70.1 271 26.6
Hma1.2p1_2902F.1_g330050 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 3.1e-10 70.1 214 32.2
Ca_05446_v3 Cicer arietinum L. HOM05D001009 ORTHO05D000829 4.0e-10 69.7 208 26.4
FAN12G2178 Fragaria x ananassa HOM05D019495 ORTHO05D200519 5.2e-10 69.3 115 44.3
PGSC0003DMG400021701 Solanum tuberosum HOM05D001009 ORTHO05D000829 6.8e-10 68.9 232 30.6
QL08p061631 Quercus lobata HOM05D001009 ORTHO05D000829 8.9e-10 68.6 218 26.6
PSO513G0054 Papaver somniferum HOM05D001009 ORTHO05D000829 1.5e-09 67.8 246 28.0
Atru.chr2.339 Acer truncatum HOM05D001009 ORTHO05D000829 2.0e-09 67.4 212 29.7
Manes.09G096200 Manihot esculenta HOM05D001009 ORTHO05D000829 2.0e-09 67.4 212 28.3
Atru.chr8.2062 Acer truncatum HOM05D001009 ORTHO05D000829 2.6e-09 67.0 270 27.8
Gohir.D04G064900 Gossypium hirsutum HOM05D001009 ORTHO05D000829 2.6e-09 67.0 212 28.3
Gorai.012G073000 Gossypium raimondii HOM05D001009 ORTHO05D000829 2.6e-09 67.0 212 28.3
Duzib106G0916 Durio zibethinus HOM05D001009 ORTHO05D000829 3.4e-09 66.6 247 26.7
PSO339G1455 Papaver somniferum HOM05D001009 ORTHO05D000829 3.4e-09 66.6 245 24.9
Actinidia02375 Actinidia chinensis HOM05D001009 ORTHO05D000829 4.4e-09 66.2 214 27.6
CSS0049537 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 4.4e-09 66.2 268 25.0
CiPaw.09G199200 Carya illinoinensis HOM05D001009 ORTHO05D000829 4.4e-09 66.2 205 27.8
TPR.G38424 Trifolium pratense HOM05D001009 ORTHO05D000829 4.4e-09 66.2 214 29.0
Hma1.2p1_0026F.1_g016350 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 7.5e-09 65.5 214 31.3
Cpa.g.sc33.170 Carica papaya HOM05D001009 ORTHO05D000829 9.8e-09 65.1 215 31.2
Dinv34469 Davidia involucrata HOM05D001009 ORTHO05D000829 9.8e-09 65.1 212 29.7
Gohir.A05G347400 Gossypium hirsutum HOM05D001009 ORTHO05D000829 1.3e-08 64.7 212 29.2
MBI05_g02642_MAGBIO Magnolia biondii HOM05D001009 ORTHO05D000829 1.3e-08 64.7 246 29.3
QL07p028800 Quercus lobata HOM05D001009 ORTHO05D000829 1.3e-08 64.7 219 30.6
MD12G1094400 Malus domestica HOM05D001009 ORTHO05D000829 1.7e-08 64.3 229 27.5
CiPaw.01G292100 Carya illinoinensis HOM05D001009 ORTHO05D000829 2.2e-08 63.9 220 26.8
DCAR_027590 Daucus carota HOM05D001009 ORTHO05D000829 2.2e-08 63.9 258 28.3
Potri.006G090700 Populus trichocarpa HOM05D001009 ORTHO05D000829 2.2e-08 63.9 214 27.1
GSVIVG01016468001 Vitis vinifera HOM05D001009 ORTHO05D000829 2.2e-08 63.9 216 30.1
Glyma.02G251000 Glycine max HOM05D001009 ORTHO05D000829 2.9e-08 63.5 218 28.9
Psat2g038720 Pisum sativum HOM05D001009 ORTHO05D000829 2.9e-08 63.5 222 26.1
QL08p061636 Quercus lobata HOM05D001009 ORTHO05D000829 2.9e-08 63.5 217 24.9
Rhsim09G0168700 Rhododendron simsii HOM05D001009 ORTHO05D000829 2.9e-08 63.5 211 32.2
THA.LOC104823266 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 2.9e-08 63.5 219 29.2
AT5G02050 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 3.7e-08 63.2 229 33.2
PGR142G2699 Punica granatum HOM05D001009 ORTHO05D000829 3.7e-08 63.2 207 27.5
arahy.Tifrunner.gnm1.ann1.B3W4AW Arachis hypogaea HOM05D001009 ORTHO05D000829 4.9e-08 62.8 226 26.5
BcaB02g08407 Brassica carinata HOM05D001009 ORTHO05D000829 4.9e-08 62.8 224 26.8
Medtr5g080880 Medicago truncatula HOM05D001009 ORTHO05D000829 4.9e-08 62.8 224 26.8
arahy.Tifrunner.gnm1.ann1.FFR9P9 Arachis hypogaea HOM05D001009 ORTHO05D000829 6.4e-08 62.4 242 25.6
FAN05G5018 Fragaria x ananassa HOM05D000229 ORTHO05D000182 6.4e-08 62.4 188 31.9
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 6.4e-08 62.4 216 26.4
Manes.08G086600 Manihot esculenta HOM05D001009 ORTHO05D000829 6.4e-08 62.4 212 27.8
TWI77G0127 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 6.4e-08 62.4 177 28.8
TAR636G2594 Trochodendron aralioides HOM05D001009 ORTHO05D000829 6.4e-08 62.4 247 27.9
arahy.Tifrunner.gnm1.ann1.U1AIJ2 Arachis hypogaea HOM05D001009 ORTHO05D000829 8.3e-08 62.0 241 25.3
CANSAT35G1073 Cannabis sativa HOM05D001009 ORTHO05D000829 8.3e-08 62.0 213 31.0
TWI74G1509 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 8.3e-08 62.0 273 25.3
Nn6g31598 Nelumbo nucifera HOM05D001009 ORTHO05D000829 1.1e-07 61.6 178 34.8
Solyc03g079930.3 Solanum lycopersicum HOM05D001009 ORTHO05D000829 1.1e-07 61.6 232 23.3
Sopen03g027200 Solanum pennellii HOM05D001009 ORTHO05D000829 1.1e-07 61.6 204 24.0
TAR636G1456 Trochodendron aralioides HOM05D001009 ORTHO05D000829 1.1e-07 61.6 250 28.0
VMungo0647G0043 Vigna mungo HOM05D001009 ORTHO05D000829 1.1e-07 61.6 222 26.1
DCAR_011745 Daucus carota HOM05D001009 ORTHO05D000829 1.4e-07 61.2 233 29.6
Nitab4.5_0004474g0020 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.4e-07 61.2 268 26.5
Potri.016G102200 Populus trichocarpa HOM05D001009 ORTHO05D000829 1.4e-07 61.2 218 32.1
Sabra06G0068500 Salix brachista HOM05D001009 ORTHO05D000829 1.4e-07 61.2 206 25.7
Sc11g0007650 Simmondsia chinensis HOM05D001009 ORTHO05D000829 1.4e-07 61.2 211 32.2
vmacro10213 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 1.4e-07 61.2 211 24.6
BcaB01g06209 Brassica carinata HOM05D001009 ORTHO05D000829 1.9e-07 60.8 270 34.1
Cfa001417 Carpinus fangiana HOM05D001009 ORTHO05D000829 1.9e-07 60.8 234 26.1
Lsat_1_v5_gn_9_63501 Lactuca sativa HOM05D001009 ORTHO05D000829 1.9e-07 60.8 214 32.2
Nitab4.5_0006374g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.9e-07 60.8 250 26.0
THA.LOC104816245 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 1.9e-07 60.8 222 24.8
A10p33520 Brassica napus HOM05D000031 ORTHO05D001864 2.4e-07 60.5 219 32.9
BraA10t45382Z Brassica rapa HOM05D000031 ORTHO05D001864 2.4e-07 60.5 219 32.9
AUR62040690 Chenopodium quinoa HOM05D001009 ORTHO05D000829 2.4e-07 60.5 214 26.2
CsaV3_6G001390 Cucumis sativus L. HOM05D001009 ORTHO05D000829 2.4e-07 60.5 212 28.8
Nitab4.5_0000987g0110 Nicotiana tabacum HOM05D001009 ORTHO05D000829 2.4e-07 60.5 262 23.3
Aa31LG1G22650 Aethionema arabicum HOM05D001009 ORTHO05D000829 3.2e-07 60.1 229 31.0
A03p00490 Brassica napus HOM05D001009 ORTHO05D000829 3.2e-07 60.1 276 29.3
BraA03t09441Z Brassica rapa HOM05D001009 ORTHO05D000829 3.2e-07 60.1 276 29.3
AUR62012145 Chenopodium quinoa HOM05D001009 ORTHO05D000829 3.2e-07 60.1 214 31.8
MD07G1204400 Malus domestica HOM05D001009 ORTHO05D000829 3.2e-07 60.1 210 29.5
Phvul.008G230400 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 3.2e-07 60.1 213 24.9
Actinidia13891 Actinidia chinensis HOM05D001009 ORTHO05D000829 4.1e-07 59.7 214 23.8
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 4.1e-07 59.7 214 28.5
TWI15G0684 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 4.1e-07 59.7 212 25.5
arahy.Tifrunner.gnm1.ann1.4F3MJE Arachis hypogaea HOM05D001009 ORTHO05D000829 5.4e-07 59.3 209 24.9
BcaB01g06073 Brassica carinata HOM05D001009 ORTHO05D000829 5.4e-07 59.3 276 29.7
BcaNung04456 Brassica carinata HOM05D001009 ORTHO05D000829 5.4e-07 59.3 215 32.6
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 5.4e-07 59.3 215 32.6
Thhalv10014436m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 5.4e-07 59.3 216 33.3
BcaNung04457 Brassica carinata HOM05D001009 ORTHO05D000829 7.1e-07 58.9 215 37.2
BcaNung05705 Brassica carinata HOM05D001009 ORTHO05D000829 7.1e-07 58.9 215 37.2
Eucgr.G02989 Eucalyptus grandis HOM05D001009 ORTHO05D000829 7.1e-07 58.9 204 27.9
MD01G1140100 Malus domestica HOM05D001009 ORTHO05D000829 7.1e-07 58.9 226 31.0
Nn2g11241 Nelumbo nucifera HOM05D001009 ORTHO05D000829 7.1e-07 58.9 264 29.2
Nitab4.5_0000779g0060 Nicotiana tabacum HOM05D001009 ORTHO05D000829 7.1e-07 58.9 204 31.9
Oeu059732.1 Olea europaea HOM05D001009 ORTHO05D000829 7.1e-07 58.9 207 30.0
Cpa.g.sc454.2 Carica papaya HOM05D001009 ORTHO05D000829 9.2e-07 58.5 217 25.3
Sabra16G0102400 Salix brachista HOM05D000229 ORTHO05D000182 9.2e-07 58.5 222 31.5
TWI63G0148 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 9.2e-07 58.5 212 25.0
MSTRG.8284 Avicennia marina HOM05D001009 ORTHO05D000829 1.2e-06 58.2 214 25.2
Cc02_g07350 Coffea canephora HOM05D001009 ORTHO05D000829 1.2e-06 58.2 94 34.0
MELO3C008244.2 Cucumis melo HOM05D001009 ORTHO05D000829 1.2e-06 58.2 223 26.9
FvH4_4g19611 Fragaria vesca HOM05D051979 ORTHO05D046049 1.2e-06 58.2 98 42.9
FAN12G1846 Fragaria x ananassa HOM05D051979 ORTHO05D046049 1.2e-06 58.2 52 57.7
ATR0559G287 Amborella trichopoda HOM05D001009 ORTHO05D000829 1.6e-06 57.8 205 25.9
Aqoxy2G02348 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 2.1e-06 57.4 223 31.4
C03p00770 Brassica napus HOM05D001009 ORTHO05D000829 2.1e-06 57.4 276 29.3
BolC3t12640H Brassica oleracea HOM05D001009 ORTHO05D000829 2.1e-06 57.4 276 29.3
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 2.1e-06 57.4 217 24.4
Sp6g40380 Schrenkiella parvula HOM05D001009 ORTHO05D000829 2.1e-06 57.4 223 32.7
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 2.7e-06 57.0 198 25.8
COL.COLO4_25520 Corchorus olitorius HOM05D001009 ORTHO05D000829 2.7e-06 57.0 233 26.6
ECA232G3500 Erigeron canadensis HOM05D001009 ORTHO05D000829 2.7e-06 57.0 214 29.4
Lj8A78T47 Lonicera japonica HOM05D001009 ORTHO05D000829 2.7e-06 57.0 94 34.0
Peaxi162Scf00611g00321 Petunia axillaris HOM05D001009 ORTHO05D000829 2.7e-06 57.0 244 25.8
C09p74430 Brassica napus HOM05D000031 ORTHO05D001864 3.5e-06 56.6 215 34.4
Ca_05905_v3 Cicer arietinum L. HOM05D001009 ORTHO05D000829 3.5e-06 56.6 209 28.2
Manes.07G120600 Manihot esculenta HOM05D001009 ORTHO05D000829 3.5e-06 56.6 209 24.9
Sp5g06870 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.5e-06 56.6 265 24.9
TPR.G25850 Trifolium pratense HOM05D001009 ORTHO05D000829 3.5e-06 56.6 215 29.8
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 4.6e-06 56.2 216 31.5
Thhalv10010645m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 4.6e-06 56.2 218 25.2
MD00G1150700 Malus domestica HOM05D001009 ORTHO05D000829 4.6e-06 56.2 105 31.4
EL10Ac2g04692 Beta vulgaris HOM05D001009 ORTHO05D000829 6.0e-06 55.8 212 32.1
CARHR211300 Cardamine hirsuta HOM05D001009 ORTHO05D000829 6.0e-06 55.8 216 25.5
QL08p061640 Quercus lobata HOM05D001009 ORTHO05D000829 6.0e-06 55.8 90 33.3
MSTRG.263 Avicennia marina HOM05D001009 ORTHO05D000829 7.8e-06 55.5 211 22.3
SalBow6G2327 Salvia bowleyana HOM05D001009 ORTHO05D000829 7.8e-06 55.5 211 26.5


User provided reference genes

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