Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5890 Fragaria x ananassa HOM05D013498 ORTHO05D035377 5.8e-49 197.2 98 100.0
FAN14G1036 Fragaria x ananassa HOM05D013498 ORTHO05D035377 3.5e-46 188.0 98 96.9
FvH4_6g05980 Fragaria vesca HOM05D013498 ORTHO05D035377 1.8e-42 175.6 89 98.9
FvH4_6g04900 Fragaria vesca HOM05D013498 ORTHO05D035290 2.6e-17 92.0 87 65.5
FvH4_6g04910 Fragaria vesca HOM05D013498 ORTHO05D035290 2.0e-12 75.9 81 54.3
FAN09G1761 Fragaria x ananassa HOM05D013498 ORTHO05D035290 1.8e-10 69.3 57 61.4
FAN14G3688 Fragaria x ananassa HOM05D013498 ORTHO05D035239 1.3e-08 63.2 97 47.4
FAN14G4835 Fragaria x ananassa HOM05D013498 ORTHO05D035239 1.3e-08 63.2 97 47.4
FAN09G0787 Fragaria x ananassa HOM05D013498 ORTHO05D198999 5.0e-08 61.2 92 47.8
RcHm_v2.0_Chr6g0311781 Rosa chinensis HOM05D000597 ORTHO05D006307 5.0e-08 61.2 46 73.9
FvH4_6g05970 Fragaria vesca HOM05D013498 ORTHO05D035239 6.5e-08 60.8 97 46.4
FAN20G1139 Fragaria x ananassa HOM05D000597 ORTHO05D006307 6.5e-08 60.8 54 68.5
A10p18830 Brassica napus HOM05D000597 ORTHO05D006307 1.5e-07 59.7 60 60.0
BraA10t43962Z Brassica rapa HOM05D000597 ORTHO05D006307 1.5e-07 59.7 60 60.0
FAN27G3506 Fragaria x ananassa HOM05D000597 ORTHO05D006307 1.5e-07 59.7 54 66.7
Lj7C223T2 Lonicera japonica HOM05D000597 ORTHO05D006307 1.5e-07 59.7 54 66.7
Sed0018261 Sechium edule HOM05D000597 ORTHO05D006307 1.9e-07 59.3 60 60.0
PSO386G0136 Papaver somniferum HOM05D000597 ORTHO05D006307 2.5e-07 58.9 54 66.7
ClCG05G015730 Citrullus lanatus HOM05D000597 ORTHO05D006307 3.2e-07 58.5 54 66.7
MELO3C016911.2 Cucumis melo HOM05D000597 ORTHO05D006307 3.2e-07 58.5 54 66.7
CsaV3_4G036030 Cucumis sativus L. HOM05D000597 ORTHO05D006307 3.2e-07 58.5 54 66.7
DCAR_004381 Daucus carota HOM05D000597 ORTHO05D006307 3.2e-07 58.5 46 67.4
FvH4_2g30990 Fragaria vesca HOM05D000597 ORTHO05D006307 3.2e-07 58.5 54 66.7
FAN05G3108 Fragaria x ananassa HOM05D013498 ORTHO05D210002 4.2e-07 58.2 60 56.7
FAN05G3291 Fragaria x ananassa HOM05D013498 ORTHO05D207618 4.2e-07 58.2 60 56.7
CAN.G726.14 Capsicum annuum HOM05D000597 ORTHO05D006307 5.5e-07 57.8 61 55.7
Nitab4.5_0000446g0210 Nicotiana tabacum HOM05D000597 ORTHO05D006307 5.5e-07 57.8 66 57.6
BcaB05g22764 Brassica carinata HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BcaC03g13842 Brassica carinata HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BcaC04g19509 Brassica carinata HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BNapus_Darmor_BZH_scaffold_38p01010 Brassica napus HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
C09p54840 Brassica napus HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BolC2t07118H Brassica oleracea HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BolC9t58344H Brassica oleracea HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
BraA02t05627Z Brassica rapa HOM05D000597 ORTHO05D006307 7.2e-07 57.4 60 58.3
Thhalv10013259m.g Eutrema salsugineum HOM05D000597 ORTHO05D006307 7.2e-07 57.4 73 54.8
Peaxi162Scf00101g01910 Petunia axillaris HOM05D000597 ORTHO05D006307 7.2e-07 57.4 66 56.1
Psat6g022720 Pisum sativum HOM05D000597 ORTHO05D006307 7.2e-07 57.4 66 56.1
Sopen08g017330 Solanum pennellii HOM05D000597 ORTHO05D006307 7.2e-07 57.4 54 64.8
PGSC0003DMG400031421 Solanum tuberosum HOM05D000597 ORTHO05D006307 7.2e-07 57.4 54 64.8
THA.LOC104810957 Tarenaya hassleriana HOM05D000597 ORTHO05D006307 7.2e-07 57.4 56 64.3
BcaB08g36471 Brassica carinata HOM05D000597 ORTHO05D006307 9.4e-07 57.0 73 54.8
Carub.0006s1953 Capsella rubella HOM05D000597 ORTHO05D006307 9.4e-07 57.0 60 58.3
CAN.G567.3 Capsicum annuum HOM05D000597 ORTHO05D006307 9.4e-07 57.0 66 57.6
Sp6g23300 Schrenkiella parvula HOM05D000597 ORTHO05D006307 9.4e-07 57.0 60 58.3
TPR.G38831 Trifolium pratense HOM05D000597 ORTHO05D006307 9.4e-07 57.0 66 56.1
AL6G32860 Arabidopsis lyrata HOM05D000597 ORTHO05D006307 1.2e-06 56.6 60 58.3
AT5G21482 Arabidopsis thaliana HOM05D000597 ORTHO05D006307 1.2e-06 56.6 60 58.3
CSS0003687 Camellia sinensis var. sinensis HOM05D000597 ORTHO05D006307 1.2e-06 56.6 66 57.6
CARHR191650 Cardamine hirsuta HOM05D000597 ORTHO05D006307 1.2e-06 56.6 60 58.3
Nitab4.5_0000341g0010 Nicotiana tabacum HOM05D000597 ORTHO05D006307 1.2e-06 56.6 66 54.5
Oeu047077.1 Olea europaea HOM05D000597 ORTHO05D006307 1.2e-06 56.6 54 63.0
Solyc08g061930.4 Solanum lycopersicum HOM05D000597 ORTHO05D006307 1.2e-06 56.6 66 54.5
arahy.Tifrunner.gnm1.ann1.1E8W48 Arachis hypogaea HOM05D000597 ORTHO05D006307 1.6e-06 56.2 66 54.5
arahy.Tifrunner.gnm1.ann1.7YV5MC Arachis hypogaea HOM05D000597 ORTHO05D006307 1.6e-06 56.2 66 54.5
CAN.G6.10 Capsicum annuum HOM05D000597 ORTHO05D006307 1.6e-06 56.2 46 65.2
Gohir.D05G040300 Gossypium hirsutum HOM05D000597 ORTHO05D006307 1.6e-06 56.2 54 64.8
Gorai.009G040700 Gossypium raimondii HOM05D000597 ORTHO05D006307 1.6e-06 56.2 54 64.8
Lj5g0020207 Lotus japonicus HOM05D000597 ORTHO05D006307 1.6e-06 56.2 66 56.1
PSO210G5112 Papaver somniferum HOM05D000597 ORTHO05D006307 1.6e-06 56.2 54 63.0
Gohir.A05G038800 Gossypium hirsutum HOM05D000597 ORTHO05D006307 2.1e-06 55.8 54 63.0
TAR626G0373 Trochodendron aralioides HOM05D000597 ORTHO05D006307 2.1e-06 55.8 60 55.0
TAR626G1574 Trochodendron aralioides HOM05D000597 ORTHO05D006307 2.1e-06 55.8 60 55.0
HanXRQChr03g0066891 Helianthus annuus HOM05D000597 ORTHO05D006307 2.7e-06 55.5 60 55.0
Phvul.009G081666 Phaseolus vulgaris HOM05D000597 ORTHO05D006307 2.7e-06 55.5 54 61.1
Phvul.009G081800 Phaseolus vulgaris HOM05D000597 ORTHO05D006307 2.7e-06 55.5 54 61.1
Phvul.L001656 Phaseolus vulgaris HOM05D000597 ORTHO05D006307 2.7e-06 55.5 54 61.1
Prupe.1G404300 Prunus persica HOM05D000597 ORTHO05D006307 2.7e-06 55.5 54 63.0
Sopen08g017300 Solanum pennellii HOM05D000597 ORTHO05D006307 2.7e-06 55.5 66 54.5
AT2G41510 Arabidopsis thaliana HOM05D000597 ORTHO05D000603 3.6e-06 55.1 54 63.0
MSTRG.19509 Avicennia marina HOM05D000597 ORTHO05D000603 3.6e-06 55.1 59 55.9
CDE06G0608 Ceratophyllum demersum HOM05D000597 ORTHO05D006307 3.6e-06 55.1 60 58.3
CDE07G0911 Ceratophyllum demersum HOM05D000597 ORTHO05D006307 3.6e-06 55.1 60 58.3
ClCG02G013960 Citrullus lanatus HOM05D000597 ORTHO05D000603 3.6e-06 55.1 67 47.8
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 3.6e-06 55.1 54 61.1
Migut.A00080 Erythranthe guttata HOM05D000597 ORTHO05D006307 3.6e-06 55.1 60 53.3
PGSC0003DMG400031420 Solanum tuberosum HOM05D000597 ORTHO05D006307 3.6e-06 55.1 66 54.5
Carub.0004s2381 Capsella rubella HOM05D000597 ORTHO05D000603 4.7e-06 54.7 54 61.1
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 4.7e-06 54.7 59 55.9
Ciclev10007999m.g Citrus clementina HOM05D000597 ORTHO05D006307 4.7e-06 54.7 60 56.7
Duzib168G1163 Durio zibethinus HOM05D000597 ORTHO05D006307 4.7e-06 54.7 56 62.5
Lsat_1_v5_gn_7_58561 Lactuca sativa HOM05D000597 ORTHO05D006307 4.7e-06 54.7 60 55.0
Lalb_Chr03g0024201 Lupinus albus HOM05D000597 ORTHO05D000603 4.7e-06 54.7 54 63.0
Lalb_Chr14g0366471 Lupinus albus HOM05D000597 ORTHO05D006307 4.7e-06 54.7 66 53.0
Medtr1g015410 Medicago truncatula HOM05D000597 ORTHO05D006307 4.7e-06 54.7 66 53.0
QL02p016975 Quercus lobata HOM05D000597 ORTHO05D006307 4.7e-06 54.7 54 63.0
AL4G39600 Arabidopsis lyrata HOM05D000597 ORTHO05D000603 6.1e-06 54.3 54 63.0
BcaB01g03464 Brassica carinata HOM05D000597 ORTHO05D000603 6.1e-06 54.3 54 61.1
Glyma.04G055600 Glycine max HOM05D000597 ORTHO05D006307 6.1e-06 54.3 54 59.3
Glyma.14G099000 Glycine max HOM05D000597 ORTHO05D006307 6.1e-06 54.3 66 54.5
MD15G1050100 Malus domestica HOM05D000597 ORTHO05D006307 6.1e-06 54.3 54 61.1
Manes.16G085500 Manihot esculenta HOM05D000597 ORTHO05D006307 6.1e-06 54.3 56 60.7
Hund03298 Selenicereus undatus HOM05D000597 ORTHO05D006307 6.1e-06 54.3 54 61.1
THA.LOC104799579 Tarenaya hassleriana HOM05D000597 ORTHO05D006307 6.1e-06 54.3 56 58.9
GSVIVG01035468001 Vitis vinifera HOM05D000597 ORTHO05D006307 6.1e-06 54.3 75 49.3
Aa31LG1G23550 Aethionema arabicum HOM05D000597 ORTHO05D000603 8.0e-06 53.9 54 61.1
CAN.G561.13 Capsicum annuum HOM05D000597 ORTHO05D000603 8.0e-06 53.9 68 52.9
Ca_13108_v3 Cicer arietinum L. HOM05D000597 ORTHO05D006307 8.0e-06 53.9 66 53.0
Thhalv10016470m.g Eutrema salsugineum HOM05D000597 ORTHO05D000603 8.0e-06 53.9 54 61.1
Lalb_Chr22g0356241 Lupinus albus HOM05D000597 ORTHO05D006307 8.0e-06 53.9 54 57.4
SGA_v2.0_scaffold20G09166 Striga asiatica HOM05D000597 ORTHO05D006307 8.0e-06 53.9 46 65.2
SGA_v2.0_scaffold23G10023 Striga asiatica HOM05D000597 ORTHO05D000603 8.0e-06 53.9 59 54.2


User provided reference genes

Program Settings