Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5887 Fragaria x ananassa HOM05D000187 ORTHO05D029505 4.7e-34 147.1 66 100.0
FAN10G0322 Fragaria x ananassa HOM05D000187 ORTHO05D029505 3.0e-33 144.4 66 98.5
FAN09G2404 Fragaria x ananassa HOM05D000187 ORTHO05D029505 5.9e-29 130.2 65 90.8
FAN01G2937 Fragaria x ananassa HOM05D010776 ORTHO05D000926 6.8e-25 116.7 58 91.4
FAN10G2495 Fragaria x ananassa HOM05D000187 ORTHO05D000926 5.5e-19 97.1 61 75.4
FAN06G3817 Fragaria x ananassa HOM05D000187 ORTHO05D000926 7.2e-19 96.7 61 75.4
FvH4_7g00970 Fragaria vesca HOM05D000187 ORTHO05D000926 3.6e-18 94.4 61 72.1
FvH4_3g06890 Fragaria vesca HOM05D000187 ORTHO05D029505 8.0e-18 93.2 52 82.7
RcHm_v2.0_Chr1g0315871 Rosa chinensis HOM05D000187 ORTHO05D000926 5.7e-16 87.0 48 81.2
Prupe.2G012300 Prunus persica HOM05D000187 ORTHO05D000926 1.3e-15 85.9 64 60.9
CANSAT80G2426 Cannabis sativa HOM05D000187 ORTHO05D000926 6.3e-15 83.6 62 67.7
Atru.chr11.2655 Acer truncatum HOM05D000187 ORTHO05D000926 3.1e-14 81.3 61 60.7
CiPaw.13G004000 Carya illinoinensis HOM05D000187 ORTHO05D000926 9.2e-14 79.7 61 60.7
QL04p007020 Quercus lobata HOM05D000187 ORTHO05D000926 1.2e-13 79.3 58 63.8
QL04p007307 Quercus lobata HOM05D000187 ORTHO05D000926 1.2e-13 79.3 58 63.8
MD07G1009300 Malus domestica HOM05D000187 ORTHO05D000926 3.5e-13 77.8 61 60.7
Manes.10G143800 Manihot esculenta HOM05D000187 ORTHO05D000926 3.5e-13 77.8 48 72.9
Thecc.01G411600 Theobroma cacao HOM05D000187 ORTHO05D000926 7.8e-13 76.6 48 72.9
Duzib138G0898 Durio zibethinus HOM05D000187 ORTHO05D000926 1.0e-12 76.3 60 65.0
Potri.009G062100 Populus trichocarpa HOM05D000187 ORTHO05D000926 2.3e-12 75.1 61 59.0
Dinv09360 Davidia involucrata HOM05D000187 ORTHO05D000926 2.9e-12 74.7 61 57.4
Duzib268G1602 Durio zibethinus HOM05D000187 ORTHO05D000926 2.9e-12 74.7 61 60.7
Sabra09G0045900 Salix brachista HOM05D000187 ORTHO05D000926 3.9e-12 74.3 48 68.8
MD02G1313100 Malus domestica HOM05D000187 ORTHO05D000926 1.5e-11 72.4 61 54.1
GSVIVG01032082001 Vitis vinifera HOM05D000187 ORTHO05D000926 1.9e-11 72.0 58 58.6
Potri.001G267700 Populus trichocarpa HOM05D000187 ORTHO05D000926 4.3e-11 70.9 48 66.7
Ciclev10032570m.g Citrus clementina HOM05D000187 ORTHO05D000926 9.5e-11 69.7 61 54.1
ECA248G3044 Erigeron canadensis HOM05D000187 ORTHO05D000926 4.0e-09 64.3 47 57.4
Dinv43450 Davidia involucrata HOM05D000187 ORTHO05D000926 1.5e-08 62.4 42 66.7
Sc10g0000040 Simmondsia chinensis HOM05D000187 ORTHO05D000926 1.5e-08 62.4 65 44.6
Glyma.13G203300 Glycine max HOM05D000187 ORTHO05D000926 2.0e-08 62.0 61 47.5
PGR031G0513 Punica granatum HOM05D000187 ORTHO05D000926 2.0e-08 62.0 58 53.4
TWI73G0757 Tripterygium wilfordii HOM05D000187 ORTHO05D000926 2.0e-08 62.0 48 62.5
Hma1.2p1_0293F.1_g116210 Hydrangea macrophylla HOM05D000187 ORTHO05D000926 2.6e-08 61.6 63 49.2
TAR623G0699 Trochodendron aralioides HOM05D000187 ORTHO05D000926 2.6e-08 61.6 61 47.5
TAR623G1086 Trochodendron aralioides HOM05D000187 ORTHO05D000926 2.6e-08 61.6 61 47.5
arahy.Tifrunner.gnm1.ann1.BBR3FV Arachis hypogaea HOM05D000187 ORTHO05D000926 3.4e-08 61.2 61 44.3
Phvul.011G213300 Phaseolus vulgaris HOM05D000187 ORTHO05D000926 3.4e-08 61.2 61 47.5
VMungo1127G0029 Vigna mungo HOM05D000187 ORTHO05D000926 4.4e-08 60.8 61 47.5
arahy.Tifrunner.gnm1.ann1.AJX1BJ Arachis hypogaea HOM05D000187 ORTHO05D000926 5.8e-08 60.5 61 44.3
Lsat_1_v5_gn_1_107200 Lactuca sativa HOM05D000187 ORTHO05D000926 5.8e-08 60.5 47 57.4
Medtr8g036640 Medicago truncatula HOM05D000187 ORTHO05D000926 5.8e-08 60.5 62 50.0
Medtr8g037150 Medicago truncatula HOM05D000187 ORTHO05D000926 5.8e-08 60.5 62 50.0
Actinidia20670 Actinidia chinensis HOM05D000187 ORTHO05D000926 7.5e-08 60.1 61 44.3
Cc02_g27840 Coffea canephora HOM05D000187 ORTHO05D000926 1.3e-07 59.3 64 50.0
Lj7C570G5 Lonicera japonica HOM05D000187 ORTHO05D000926 1.3e-07 59.3 48 56.2
Ca_23865_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000926 1.7e-07 58.9 62 50.0
TPR.G1869 Trifolium pratense HOM05D000187 ORTHO05D000926 1.7e-07 58.9 62 48.4
TAR633G1186 Trochodendron aralioides HOM05D000187 ORTHO05D000926 2.9e-07 58.2 56 48.2
TAR636G0766 Trochodendron aralioides HOM05D000187 ORTHO05D000926 2.9e-07 58.2 48 56.2
Os03g0173900 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000926 3.7e-07 57.8 49 55.1
ClCG09G004210 Citrullus lanatus HOM05D000187 ORTHO05D000926 6.4e-07 57.0 49 61.2
MBI01_g39017_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 6.4e-07 57.0 61 47.5
Aa31LG10G17410 Aethionema arabicum HOM05D000187 ORTHO05D000926 1.4e-06 55.8 48 50.0
MELO3C023546.2 Cucumis melo HOM05D000187 ORTHO05D000926 1.9e-06 55.5 49 59.2
CsaV3_7G031110 Cucumis sativus L. HOM05D000187 ORTHO05D000926 1.9e-06 55.5 49 59.2
HanXRQChr01g0016191 Helianthus annuus HOM05D000187 ORTHO05D000926 1.9e-06 55.5 43 51.2
MBI04_g28754_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000926 1.9e-06 55.5 64 45.3
Rhsim01G0129800 Rhododendron simsii HOM05D000187 ORTHO05D000926 2.4e-06 55.1 48 45.8
DCAR_029667 Daucus carota HOM05D000187 ORTHO05D000926 3.2e-06 54.7 61 47.5
A04p00050 Brassica napus HOM05D000187 ORTHO05D000926 4.1e-06 54.3 52 46.2
BraA04t15725Z Brassica rapa HOM05D000187 ORTHO05D000926 4.1e-06 54.3 52 46.2
Thhalv10006197m.g Eutrema salsugineum HOM05D000187 ORTHO05D000926 4.1e-06 54.3 49 53.1
AT3G63530 Arabidopsis thaliana HOM05D000187 ORTHO05D000926 5.4e-06 53.9 41 56.1
Lalb_Chr19g0132201 Lupinus albus HOM05D000187 ORTHO05D000926 5.4e-06 53.9 61 44.3
vmacro21183 Vaccinium macrocarpon HOM05D000187 ORTHO05D000926 7.0e-06 53.5 58 43.1


User provided reference genes

Program Settings