Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 5.9e-41 170.6 98 100.0
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 5.9e-41 170.6 98 100.0
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 5.9e-41 170.6 98 100.0
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 5.9e-33 144.1 94 84.0
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 6.1e-22 107.5 67 77.6
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 6.1e-22 107.5 67 77.6
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 8.0e-22 107.1 67 80.6
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 5.7e-20 100.9 67 71.6
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 1.8e-18 95.9 67 70.1
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 1.8e-18 95.9 67 70.1
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 5.3e-18 94.4 70 61.4
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 4.5e-17 91.3 69 60.9
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.7e-16 89.4 71 64.8
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 2.2e-16 89.0 71 67.6
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.2e-16 89.0 71 66.2
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.9e-15 85.9 64 64.1
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 4.2e-15 84.7 68 61.8
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 7.2e-15 84.0 67 65.7
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 1.6e-14 82.8 70 65.7
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.1e-14 82.4 69 65.2
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.1e-14 82.4 69 65.2
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.7e-14 82.0 68 61.8
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 3.6e-14 81.6 60 68.3
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.6e-14 81.6 70 57.1
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 4.7e-14 81.3 73 63.0
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 6.1e-14 80.9 73 63.0
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 6.1e-14 80.9 71 63.4
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 6.1e-14 80.9 70 57.1
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 6.1e-14 80.9 68 58.8
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.4e-13 79.7 74 58.1
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.8e-13 79.3 74 58.1
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.8e-13 79.3 74 58.1
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 1.8e-13 79.3 61 65.6
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.8e-13 79.3 71 60.6
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.3e-13 79.0 75 54.7
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 2.3e-13 79.0 55 70.9
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.3e-13 79.0 68 55.9
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.8e-13 77.0 68 55.9
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 1.2e-12 76.6 60 60.0
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.6e-12 75.5 69 50.7
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.4e-12 74.7 68 58.8
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 4.4e-12 74.7 68 58.8
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 4.4e-12 74.7 71 60.6
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 5.7e-12 74.3 47 74.5
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.5e-12 73.9 68 58.8
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 1.3e-11 73.2 69 59.4
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 2.2e-11 72.4 49 65.3
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.2e-11 72.4 70 57.1
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.8e-11 72.0 64 54.7
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 2.8e-11 72.0 55 67.3
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 6.3e-11 70.9 69 50.7
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.3e-11 70.5 70 51.4
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.3e-11 70.5 70 52.9
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.1e-10 70.1 67 56.7
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.4e-10 69.7 70 52.9
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 1.4e-10 69.7 49 73.5
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 1.4e-10 69.7 54 63.0
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 1.8e-10 69.3 69 60.9
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 2.4e-10 68.9 47 66.0
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 4.1e-10 68.2 49 71.4
FAN09G3070 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.1e-10 68.2 53 69.8
Oeu052383.1 Olea europaea HOM05D006911 ORTHO05D006663 7.0e-10 67.4 54 59.3
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.2e-09 66.6 49 67.3
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.2e-09 66.6 49 67.3
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 1.2e-09 66.6 64 54.7
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 1.6e-09 66.2 57 59.6
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 1.6e-09 66.2 65 55.4
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 2.7e-09 65.5 49 67.3
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 2.7e-09 65.5 69 53.6
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 3.5e-09 65.1 46 69.6
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 5.9e-09 64.3 66 53.0
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 7.7e-09 63.9 50 64.0
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 1.0e-08 63.5 67 53.7
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.0e-08 63.5 66 54.5
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 1.3e-08 63.2 46 67.4
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 1.3e-08 63.2 57 57.9
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 1.7e-08 62.8 65 53.8
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.2e-08 62.4 63 52.4
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.2e-08 62.4 56 60.7
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 3.8e-08 61.6 46 65.2
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 3.8e-08 61.6 87 43.7
Cc09_g08880 Coffea canephora HOM05D006911 ORTHO05D006663 5.0e-08 61.2 52 61.5
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 5.0e-08 61.2 66 51.5
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 6.5e-08 60.8 70 45.7
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 6.5e-08 60.8 56 50.0
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 8.5e-08 60.5 68 50.0
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.1e-07 60.1 58 53.4
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 1.5e-07 59.7 67 50.7
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 1.9e-07 59.3 41 63.4
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 1.9e-07 59.3 68 47.1
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.9e-07 59.3 58 53.4
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.5e-07 58.9 49 63.3
Nitab4.5_0001040g0170 Nicotiana tabacum HOM05D024954 ORTHO05D006663 2.5e-07 58.9 54 61.1
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 4.2e-07 58.2 67 43.3
HPP92_024568 Vanilla planifolia HOM05D006911 ORTHO05D006663 5.5e-07 57.8 51 52.9
ATR0585G110 Amborella trichopoda HOM05D006911 ORTHO05D006663 7.2e-07 57.4 66 47.0
Lsat_1_v5_gn_1_96620 Lactuca sativa HOM05D006911 ORTHO05D006663 7.2e-07 57.4 57 52.6
Lsat_1_v5_gn_7_7541 Lactuca sativa HOM05D006911 ORTHO05D006663 9.4e-07 57.0 53 62.3
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 9.4e-07 57.0 63 52.4
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 1.2e-06 56.6 68 45.6
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.2e-06 56.6 48 58.3
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 2.7e-06 55.5 46 63.0
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 2.7e-06 55.5 63 41.3
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 3.6e-06 55.1 67 46.3
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 4.7e-06 54.7 67 44.8
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 4.7e-06 54.7 63 44.4
PSO541G4839 Papaver somniferum HOM05D006911 ORTHO05D006663 6.1e-06 54.3 40 60.0
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 8.0e-06 53.9 44 52.3
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 8.0e-06 53.9 44 52.3
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 8.0e-06 53.9 44 52.3
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 8.0e-06 53.9 68 39.7


User provided reference genes

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