Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-73 279.6 138 100.0
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 7.2e-61 237.3 134 88.1
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-54 216.5 115 91.3
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-53 213.4 106 98.1
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-53 210.3 115 89.6
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 6.1e-52 207.6 135 73.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.4e-51 206.5 135 73.3
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 6.3e-49 197.6 135 68.9
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 8.2e-49 197.2 134 70.1
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 1.8e-48 196.1 131 71.8
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.0e-46 190.3 111 83.8
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.5e-46 187.2 121 76.9
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.8e-42 173.7 134 63.4
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-41 171.4 95 86.3
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 6.3e-41 171.0 95 86.3
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.3e-41 171.0 134 62.7
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 7.0e-40 167.5 123 65.0
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 2.9e-38 162.2 110 69.1
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 6.5e-38 161.0 116 65.5
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 5.5e-37 157.9 134 60.4
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 4.7e-36 154.8 118 71.2
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.0e-35 151.8 106 69.8
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.2e-35 151.4 81 90.1
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-34 149.8 124 57.3
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 2.6e-34 149.1 127 55.9
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 3.4e-34 148.7 124 56.5
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 5.7e-34 147.9 136 54.4
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.7e-33 146.4 108 65.7
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.4e-32 142.5 131 53.4
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 3.1e-32 142.1 83 83.1
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 3.1e-32 142.1 129 52.7
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.5e-31 138.7 134 56.0
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-30 137.1 126 50.8
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.3e-30 136.7 130 50.8
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 5.0e-30 134.8 108 62.0
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 7.2e-29 131.0 132 47.0
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-27 125.9 126 46.8
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.0e-27 125.2 122 55.7
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 4.0e-27 125.2 119 52.1
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-26 123.2 110 55.5
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 8.3e-25 117.5 132 47.0
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.1e-24 117.1 119 46.2
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 2.4e-24 115.9 129 43.4
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-24 115.5 119 44.5
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 3.2e-24 115.5 107 48.6
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 7.0e-24 114.4 118 46.6
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 9.2e-24 114.0 107 52.3
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 2.0e-23 112.8 134 42.5
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 5.9e-23 111.3 114 49.1
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 5.9e-23 111.3 110 46.4
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-22 110.5 76 67.1
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-22 110.2 104 51.9
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-22 109.4 118 45.8
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.6e-21 104.8 102 48.0
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.6e-21 104.8 100 51.0
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 7.3e-21 104.4 104 47.1
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.3e-21 104.4 109 45.0
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 7.3e-21 104.4 108 46.3
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-21 104.0 96 51.0
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-21 104.0 96 51.0
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.2e-20 103.6 77 70.1
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 2.1e-20 102.8 131 42.7
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.7e-20 101.7 96 47.9
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.0e-20 100.9 104 47.1
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.4e-19 100.1 109 40.4
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-19 99.4 117 45.3
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 8.9e-19 97.4 98 48.0
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-18 96.7 107 43.9
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 2.0e-18 96.3 117 42.7
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 4.4e-18 95.1 99 47.5
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 5.8e-18 94.7 63 69.8
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 7.5e-18 94.4 61 72.1
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.8e-18 94.0 62 69.4
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 2.9e-17 92.4 85 55.3
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 3.7e-17 92.0 63 66.7
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.4e-17 91.3 121 43.8
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-16 90.5 100 48.0
FvH4_5g01582 Fragaria vesca HOM05D000003 ORTHO05D006737 2.4e-16 89.4 59 67.8
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 3.2e-16 89.0 125 39.2
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-16 89.0 86 54.7
FAN19G0368 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.2e-16 87.4 74 58.1
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 2.7e-15 85.9 104 42.3
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-14 84.0 74 55.4
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-14 82.0 75 49.3
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 2.5e-13 79.3 88 42.0
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 3.3e-13 79.0 99 40.4
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-13 77.4 98 43.9
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-12 77.0 91 41.8
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-12 77.0 134 34.3
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 3.6e-12 75.5 46 71.7
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 4.7e-12 75.1 121 36.4
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 6.2e-12 74.7 72 48.6
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-11 73.6 70 54.3
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.0e-11 72.0 74 47.3
FAN04G2364 Fragaria x ananassa HOM05D030836 ORTHO05D035801 6.8e-11 71.2 61 67.2
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.2e-10 70.5 135 31.1
FAN22G0118 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.3e-09 67.0 73 42.5
TWI38G0639 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.9e-09 65.9 133 31.6
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.7e-09 65.5 60 53.3
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.7e-09 65.5 67 43.3
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 3.7e-09 65.5 124 33.9
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.4e-09 64.7 67 46.3
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 8.3e-09 64.3 122 30.3
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 1.1e-08 63.9 124 28.2
TAR331G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 1.1e-08 63.9 123 31.7
FAN18G4526 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-08 63.5 57 61.4
FAN07G0587 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-08 63.2 73 41.1
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 2.4e-08 62.8 61 47.5
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-08 62.4 66 45.5
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 3.2e-08 62.4 37 75.7
QL07p011546 Quercus lobata HOM05D000003 ORTHO05D000167 3.2e-08 62.4 125 30.4
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 5.4e-08 61.6 57 47.4
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 5.4e-08 61.6 91 34.1
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 5.4e-08 61.6 109 33.9
FAN23G2658 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.1e-08 61.2 77 45.5
Lj9P307T25 Lonicera japonica HOM05D000003 ORTHO05D000167 7.1e-08 61.2 110 30.0
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 7.1e-08 61.2 114 31.6
Dinv37210 Davidia involucrata HOM05D000003 ORTHO05D000167 9.2e-08 60.8 131 27.5
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 9.2e-08 60.8 108 31.5
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-07 60.1 87 33.3
FAN26G0688 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-07 60.1 58 53.4
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 1.6e-07 60.1 102 34.3
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 1.6e-07 60.1 99 35.4
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 2.1e-07 59.7 120 27.5
FAN28G1122 Fragaria x ananassa HOM05D013595 ORTHO05D010662 2.1e-07 59.7 118 31.4
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 2.1e-07 59.7 107 29.9
Duzib170G1141 Durio zibethinus HOM05D000003 ORTHO05D000167 2.7e-07 59.3 114 28.1
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.5e-07 58.9 75 42.7
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 3.5e-07 58.9 100 35.0
QL12p021712 Quercus lobata HOM05D000003 ORTHO05D000167 3.5e-07 58.9 109 29.4
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 3.5e-07 58.9 99 31.3
RcHm_v2.0_Chr5g0040021 Rosa chinensis HOM05D000003 ORTHO05D000022 3.5e-07 58.9 99 31.3
FAN28G0423 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.0e-07 58.2 62 50.0
TWI36G1323 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 6.0e-07 58.2 101 33.7
RcHm_v2.0_Chr1g0333161 Rosa chinensis HOM05D009322 ORTHO05D010713 7.8e-07 57.8 95 34.7
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 1.0e-06 57.4 124 26.6
FvH4_6g25791 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-06 57.4 98 28.6
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-06 57.4 80 40.0
FAN05G1674 Fragaria x ananassa HOM05D038108 ORTHO05D006737 1.3e-06 57.0 65 44.6
Dinv24219 Davidia involucrata HOM05D000003 ORTHO05D011454 1.7e-06 56.6 100 30.0
FvH4_4g07172 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-06 56.6 52 51.9
RcHm_v2.0_Chr5g0046251 Rosa chinensis HOM05D008833 ORTHO05D010662 1.7e-06 56.6 127 29.1
RcHm_v2.0_Chr6g0266871 Rosa chinensis HOM05D000003 ORTHO05D000022 1.7e-06 56.6 102 34.3
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 2.3e-06 56.2 120 26.7
CANSAT21G0849 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-06 56.2 123 28.5
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.3e-06 56.2 70 42.9
FAN12G0644 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.3e-06 56.2 44 63.6
FAN09G1162 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.0e-06 55.8 47 55.3
Lj5g0023125 Lotus japonicus HOM05D000003 ORTHO05D000004 3.0e-06 55.8 125 28.8
CANSAT01G3289 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-06 55.5 116 28.4
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 3.9e-06 55.5 105 30.5
Sed0013469 Sechium edule HOM05D000003 ORTHO05D000167 3.9e-06 55.5 121 29.8
Sed0023448 Sechium edule HOM05D015284 ORTHO05D000167 3.9e-06 55.5 110 23.6
Atru.chr9.2211 Acer truncatum HOM05D000003 ORTHO05D000167 5.1e-06 55.1 105 26.7
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 5.1e-06 55.1 109 31.2
CANSAT21G1904 Cannabis sativa HOM05D000003 ORTHO05D000004 6.6e-06 54.7 108 32.4
QL04p002496 Quercus lobata HOM05D014996 ORTHO05D000022 6.6e-06 54.7 89 34.8
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 6.6e-06 54.7 105 29.5
RcHm_v2.0_Chr7g0239141 Rosa chinensis HOM05D008833 ORTHO05D010662 6.6e-06 54.7 83 34.9
CANSAT54G0363 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-06 54.3 123 26.8
FvH4_3g27901 Fragaria vesca HOM05D000003 ORTHO05D000022 8.6e-06 54.3 102 30.4
Sed0009635 Sechium edule HOM05D015284 ORTHO05D000167 8.6e-06 54.3 99 30.3


User provided reference genes

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