Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5798 Fragaria x ananassa HOM05D015760 ORTHO05D020672 6.8e-162 573.9 292 100.0
FvH4_6g05851 Fragaria vesca HOM05D015760 ORTHO05D020672 9.4e-119 430.6 235 97.0
FAN08G1776 Fragaria x ananassa HOM05D015760 ORTHO05D020672 7.7e-113 411.0 251 87.6
FvH4_6g24690 Fragaria vesca HOM05D015760 ORTHO05D020672 1.0e-112 410.6 250 87.2
FAN14G4969 Fragaria x ananassa HOM05D015760 ORTHO05D020672 8.5e-96 354.4 184 100.0
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 4.0e-93 345.5 242 78.5
FAN09G0453 Fragaria x ananassa HOM05D015760 ORTHO05D020672 3.3e-79 299.3 179 88.3
Glyma.12G203000 Glycine max HOM05D000325 ORTHO05D000583 1.6e-14 84.3 107 45.8
Glyma.13G298700 Glycine max HOM05D000325 ORTHO05D000583 1.8e-13 80.9 107 43.9
Hma1.2p1_2179F.1_g316220 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 2.4e-13 80.5 104 45.2
Medtr2g090230 Medicago truncatula HOM05D000325 ORTHO05D000583 1.2e-12 78.2 98 46.9
QL08p038151 Quercus lobata HOM05D000325 ORTHO05D000583 1.2e-12 78.2 119 44.5
Lj3g0021902 Lotus japonicus HOM05D000325 ORTHO05D000583 1.5e-12 77.8 105 44.8
arahy.Tifrunner.gnm1.ann1.3G9GV6 Arachis hypogaea HOM05D000325 ORTHO05D000583 2.6e-12 77.0 159 37.1
Rhsim06G0148100 Rhododendron simsii HOM05D000325 ORTHO05D000583 2.6e-12 77.0 115 42.6
Dinv23676 Davidia involucrata HOM05D000325 ORTHO05D000583 3.4e-12 76.6 105 43.8
Migut.H01064 Erythranthe guttata HOM05D000325 ORTHO05D000583 3.4e-12 76.6 98 46.9
Phvul.005G105300 Phaseolus vulgaris HOM05D000325 ORTHO05D000583 4.5e-12 76.3 150 38.7
Actinidia09870 Actinidia chinensis HOM05D000325 ORTHO05D000583 7.6e-12 75.5 119 43.7
CSS0021032 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D000583 7.6e-12 75.5 112 43.8
Cpa.g.sc700.5 Carica papaya HOM05D000325 ORTHO05D000583 7.6e-12 75.5 145 37.9
Psat7g187360 Pisum sativum HOM05D000325 ORTHO05D000583 7.6e-12 75.5 123 41.5
Sed0003371 Sechium edule HOM05D000325 ORTHO05D000583 7.6e-12 75.5 99 44.4
TPR.G35546 Trifolium pratense HOM05D000325 ORTHO05D000583 7.6e-12 75.5 98 44.9
Manes.13G148500 Manihot esculenta HOM05D000325 ORTHO05D000583 1.0e-11 75.1 138 39.1
vmacro12276 Vaccinium macrocarpon HOM05D000325 ORTHO05D000583 1.0e-11 75.1 119 42.0
arahy.Tifrunner.gnm1.ann1.BE7AXM Arachis hypogaea HOM05D000325 ORTHO05D000583 1.3e-11 74.7 109 44.0
CiPaw.04G124600 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.3e-11 74.7 119 44.5
Migut.C00285 Erythranthe guttata HOM05D000325 ORTHO05D000583 1.3e-11 74.7 89 47.2
Lalb_Chr22g0356491 Lupinus albus HOM05D000325 ORTHO05D000583 1.3e-11 74.7 105 44.8
THA.LOC104814485 Tarenaya hassleriana HOM05D000325 ORTHO05D000583 1.3e-11 74.7 154 34.4
GSVIVG01030541001 Vitis vinifera HOM05D000325 ORTHO05D000583 1.3e-11 74.7 132 39.4
MELO3C013594.2 Cucumis melo HOM05D000325 ORTHO05D000583 1.7e-11 74.3 107 43.9
Hma1.2p1_0875F.1_g231360 Hydrangea macrophylla HOM05D000325 ORTHO05D000583 1.7e-11 74.3 98 44.9
Haze_13134 Corylus avellana HOM05D000325 ORTHO05D000583 2.2e-11 73.9 163 36.2
Lj8A114G38 Lonicera japonica HOM05D000325 ORTHO05D000583 2.2e-11 73.9 98 43.9
AUR62037341 Chenopodium quinoa HOM05D000325 ORTHO05D000583 2.9e-11 73.6 147 37.4
Carub.0003s2883 Capsella rubella HOM05D000325 ORTHO05D000583 3.8e-11 73.2 82 53.7
Eucgr.K00960 Eucalyptus grandis HOM05D000325 ORTHO05D000583 3.8e-11 73.2 157 36.3
Nitab4.5_0000512g0220 Nicotiana tabacum HOM05D000325 ORTHO05D000583 3.8e-11 73.2 115 39.1
Actinidia11052 Actinidia chinensis HOM05D000325 ORTHO05D000583 8.5e-11 72.0 167 34.7
Sc21g0002600 Simmondsia chinensis HOM05D000325 ORTHO05D000583 8.5e-11 72.0 105 43.8
CsaV3_6G013060 Cucumis sativus L. HOM05D000325 ORTHO05D000583 1.1e-10 71.6 98 45.9
AT2G14830 Arabidopsis thaliana HOM05D000325 ORTHO05D000583 1.4e-10 71.2 92 50.0
DCAR_019188 Daucus carota HOM05D000325 ORTHO05D000583 1.4e-10 71.2 100 43.0
VMungo1080G1319 Vigna mungo HOM05D000325 ORTHO05D000583 1.4e-10 71.2 149 36.9
PGR142G0195 Punica granatum HOM05D000325 ORTHO05D000583 1.9e-10 70.9 91 47.3
Nn1g03997 Nelumbo nucifera HOM05D000325 ORTHO05D000583 2.5e-10 70.5 121 37.2
TAR574G0003 Trochodendron aralioides HOM05D000325 ORTHO05D000583 2.5e-10 70.5 176 32.4
Duzib132G0093 Durio zibethinus HOM05D000325 ORTHO05D000583 3.2e-10 70.1 148 33.1
Medtr4g038310 Medicago truncatula HOM05D000325 ORTHO05D000583 3.2e-10 70.1 119 40.3
AL3G46580 Arabidopsis lyrata HOM05D000325 ORTHO05D000583 4.2e-10 69.7 92 47.8
COL.COLO4_05333 Corchorus olitorius HOM05D000325 ORTHO05D000583 4.2e-10 69.7 98 43.9
Sabra13G0114900 Salix brachista HOM05D000325 ORTHO05D000583 4.2e-10 69.7 148 33.1
TPR.G21774 Trifolium pratense HOM05D000325 ORTHO05D000583 4.2e-10 69.7 91 47.3
MD17G1078700 Malus domestica HOM05D000325 ORTHO05D000583 5.5e-10 69.3 152 35.5
Psat5g271600 Pisum sativum HOM05D000325 ORTHO05D000583 5.5e-10 69.3 76 47.4
TAR626G1525 Trochodendron aralioides HOM05D000325 ORTHO05D000583 5.5e-10 69.3 107 39.3
CARHR042020 Cardamine hirsuta HOM05D000325 ORTHO05D000583 7.2e-10 68.9 157 32.5
Aa31LG10G11820 Aethionema arabicum HOM05D000325 ORTHO05D000583 9.3e-10 68.6 153 30.7
PSO478G4246 Papaver somniferum HOM05D000325 ORTHO05D000583 9.3e-10 68.6 122 36.9
Peaxi162Scf00132g00525 Petunia axillaris HOM05D000325 ORTHO05D000583 9.3e-10 68.6 152 34.2
ATR0693G077 Amborella trichopoda HOM05D000325 ORTHO05D000583 1.2e-09 68.2 100 41.0
BolC6t35809H Brassica oleracea HOM05D000325 ORTHO05D000583 1.2e-09 68.2 111 41.4
ClCG02G017510 Citrullus lanatus HOM05D000325 ORTHO05D000583 1.2e-09 68.2 91 47.3
Thecc.02G176700 Theobroma cacao HOM05D000325 ORTHO05D000583 1.2e-09 68.2 148 35.1
Thhalv10002252m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 1.6e-09 67.8 156 36.5
PGSC0003DMG400007812 Solanum tuberosum HOM05D000325 ORTHO05D000583 1.6e-09 67.8 86 47.7
Lj2A562G39 Lonicera japonica HOM05D000325 ORTHO05D000583 2.1e-09 67.4 120 38.3
Nn1g06639 Nelumbo nucifera HOM05D000325 ORTHO05D000583 2.1e-09 67.4 122 36.9
Potri.013G135700 Populus trichocarpa HOM05D000325 ORTHO05D000583 2.1e-09 67.4 148 31.8
Atru.chr6.3014 Acer truncatum HOM05D000325 ORTHO05D000583 2.7e-09 67.0 123 38.2
Aqoxy1G02583 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 2.7e-09 67.0 107 40.2
BcaB01g05380 Brassica carinata HOM05D000325 ORTHO05D000583 2.7e-09 67.0 87 50.6
FAN05G1220 Fragaria x ananassa HOM05D000325 ORTHO05D000583 2.7e-09 67.0 91 46.2
Nitab4.5_0010785g0020 Nicotiana tabacum HOM05D000325 ORTHO05D000583 2.7e-09 67.0 99 41.4
Cc05_g12400 Coffea canephora HOM05D000325 ORTHO05D000583 3.6e-09 66.6 190 31.6
FvH4_6g45140 Fragaria vesca HOM05D000325 ORTHO05D000583 3.6e-09 66.6 91 46.2
FAN02G3191 Fragaria x ananassa HOM05D000325 ORTHO05D000583 3.6e-09 66.6 91 46.2
FAN14G0335 Fragaria x ananassa HOM05D000325 ORTHO05D000583 3.6e-09 66.6 91 46.2
HanXRQChr10g0294201 Helianthus annuus HOM05D000325 ORTHO05D000583 3.6e-09 66.6 126 36.5
Nitab4.5_0002473g0030 Nicotiana tabacum HOM05D000325 ORTHO05D000583 3.6e-09 66.6 106 38.7
Prupe.5G187400 Prunus persica HOM05D000325 ORTHO05D000583 3.6e-09 66.6 90 45.6
BcaC08g43352 Brassica carinata HOM05D000325 ORTHO05D000583 4.6e-09 66.2 160 33.1
Gorai.008G153500 Gossypium raimondii HOM05D000325 ORTHO05D000583 4.6e-09 66.2 98 38.8
CsaV3_7G004330 Cucumis sativus L. HOM05D000325 ORTHO05D000583 6.1e-09 65.9 107 39.3
FAN09G2287 Fragaria x ananassa HOM05D000325 ORTHO05D000583 6.1e-09 65.9 91 46.2
Lalb_Chr03g0029291 Lupinus albus HOM05D000325 ORTHO05D000583 6.1e-09 65.9 97 42.3
MD09G1088800 Malus domestica HOM05D000325 ORTHO05D000583 7.9e-09 65.5 91 44.0
Sed0021329 Sechium edule HOM05D000325 ORTHO05D000583 7.9e-09 65.5 107 39.3
Thecc.06G192200 Theobroma cacao HOM05D000325 ORTHO05D000583 7.9e-09 65.5 106 35.8
Oeu048165.1 Olea europaea HOM05D000325 ORTHO05D000583 1.0e-08 65.1 105 41.0
Sp3g34140 Schrenkiella parvula HOM05D000325 ORTHO05D000583 1.0e-08 65.1 158 32.9
Solyc12g010700.2 Solanum lycopersicum HOM05D000325 ORTHO05D000583 1.0e-08 65.1 86 46.5
Sopen12g005290 Solanum pennellii HOM05D000325 ORTHO05D000583 1.0e-08 65.1 86 46.5
CARHR284810 Cardamine hirsuta HOM05D000325 ORTHO05D000583 1.3e-08 64.7 92 44.6
Ca_01510_v3 Cicer arietinum L. HOM05D000325 ORTHO05D000583 1.3e-08 64.7 111 40.5
Oeu029932.1 Olea europaea HOM05D000325 ORTHO05D000583 1.3e-08 64.7 105 40.0
Peaxi162Scf02133g00014 Petunia axillaris HOM05D000325 ORTHO05D000583 1.3e-08 64.7 127 38.6
TWI36G1257 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 1.3e-08 64.7 151 31.8
BraA03t09917Z Brassica rapa HOM05D000325 ORTHO05D000583 1.8e-08 64.3 86 50.0
CANSAT64G2177 Cannabis sativa HOM05D000325 ORTHO05D000583 1.8e-08 64.3 150 32.7
Gohir.D12G142000 Gossypium hirsutum HOM05D000325 ORTHO05D000583 1.8e-08 64.3 98 37.8
PSO675G4910 Papaver somniferum HOM05D000325 ORTHO05D000583 1.8e-08 64.3 150 30.7
Atru.chr10.1955 Acer truncatum HOM05D000325 ORTHO05D000583 2.3e-08 63.9 106 36.8
Aa31LG10G11380 Aethionema arabicum HOM05D000325 ORTHO05D000583 2.3e-08 63.9 147 30.6
BraA06t23429Z Brassica rapa HOM05D000106 ORTHO05D000160 2.3e-08 63.9 118 35.6
Peaxi162Scf00382g00008 Petunia axillaris HOM05D000325 ORTHO05D000583 3.0e-08 63.5 103 39.8
Sopen07g028160 Solanum pennellii HOM05D000325 ORTHO05D000583 3.0e-08 63.5 99 39.4
A03p05780 Brassica napus HOM05D000325 ORTHO05D000583 3.9e-08 63.2 170 32.9
Nitab4.5_0003022g0070 Nicotiana tabacum HOM05D000325 ORTHO05D000583 3.9e-08 63.2 106 38.7
SGA_v2.0_scaffold307G48059 Striga asiatica HOM05D000325 ORTHO05D000583 3.9e-08 63.2 95 41.1
C03p06730 Brassica napus HOM05D000325 ORTHO05D000583 5.1e-08 62.8 82 48.8
Gohir.A12G138000 Gossypium hirsutum HOM05D000325 ORTHO05D000583 5.1e-08 62.8 151 30.5
Lsat_1_v5_gn_4_65440 Lactuca sativa HOM05D000325 ORTHO05D000583 5.1e-08 62.8 133 34.6
RcHm_v2.0_Chr2g0162561 Rosa chinensis HOM05D000325 ORTHO05D000583 5.1e-08 62.8 161 31.7
C06p07170 Brassica napus HOM05D000106 ORTHO05D000160 6.7e-08 62.4 69 49.3
CAN.G486.9 Capsicum annuum HOM05D000325 ORTHO05D000583 6.7e-08 62.4 106 40.6
TWI38G0629 Tripterygium wilfordii HOM05D000325 ORTHO05D000583 6.7e-08 62.4 100 40.0
Aa31LG8G2720 Aethionema arabicum HOM05D000325 ORTHO05D000583 8.7e-08 62.0 134 32.8
A06p02180 Brassica napus HOM05D000106 ORTHO05D000160 8.7e-08 62.0 118 35.6
CAN.G248.40 Capsicum annuum HOM05D000325 ORTHO05D000583 8.7e-08 62.0 106 37.7
AL1G59940 Arabidopsis lyrata HOM05D000325 ORTHO05D038664 1.1e-07 61.6 105 37.1
CiPaw.09G054900 Carya illinoinensis HOM05D000325 ORTHO05D000583 1.1e-07 61.6 98 40.8
Ciclev10017478m.g Citrus clementina HOM05D000325 ORTHO05D000583 1.1e-07 61.6 132 34.8
Cc05_g06830 Coffea canephora HOM05D000325 ORTHO05D000583 1.1e-07 61.6 126 37.3
Sp1g38540 Schrenkiella parvula HOM05D000325 ORTHO05D000583 1.5e-07 61.2 69 46.4
AUR62038128 Chenopodium quinoa HOM05D000325 ORTHO05D000583 2.5e-07 60.5 154 33.8
Thhalv10012376m.g Eutrema salsugineum HOM05D000325 ORTHO05D000583 2.5e-07 60.5 164 32.3
PGSC0003DMG400012427 Solanum tuberosum HOM05D000325 ORTHO05D000583 3.3e-07 60.1 210 30.0
Potri.004G038600 Populus trichocarpa HOM05D000325 ORTHO05D000583 4.3e-07 59.7 91 39.6
Carub.0001s4080 Capsella rubella HOM05D000325 ORTHO05D000583 5.7e-07 59.3 89 44.9
Potri.011G122800 Populus trichocarpa HOM05D000325 ORTHO05D000583 5.7e-07 59.3 74 44.6
Sabra11G0108400 Salix brachista HOM05D000325 ORTHO05D000583 7.4e-07 58.9 67 43.3
FAN25G3773 Fragaria x ananassa HOM05D000325 ORTHO05D000583 9.7e-07 58.5 81 40.7
CDE05G1021 Ceratophyllum demersum HOM05D000207 ORTHO05D001482 1.3e-06 58.2 92 35.9
CDE05G2631 Ceratophyllum demersum HOM05D037651 ORTHO05D000583 1.3e-06 58.2 139 30.9
DCAR_019540 Daucus carota HOM05D000325 ORTHO05D000583 1.3e-06 58.2 207 26.6
Lj8A114T37 Lonicera japonica HOM05D000325 ORTHO05D000583 1.6e-06 57.8 91 42.9
PSO170G3806 Papaver somniferum HOM05D000325 ORTHO05D000583 1.6e-06 57.8 108 35.2
SEGI_24999 Sequoiadendron giganteum HOM05D000325 ORTHO05D000583 1.6e-06 57.8 139 34.5
Aqoxy1G02584 Aquilegia oxysepala HOM05D000325 ORTHO05D000583 2.2e-06 57.4 137 35.0
PSO017G7340 Papaver somniferum HOM05D000325 ORTHO05D000583 2.8e-06 57.0 102 35.3
AT1G51900 Arabidopsis thaliana HOM05D000325 ORTHO05D038664 4.8e-06 56.2 68 44.1
PGSC0003DMG400018353 Solanum tuberosum HOM05D000325 ORTHO05D000583 6.3e-06 55.8 92 37.0
Glyma.06G248400 Glycine max HOM05D000325 ORTHO05D000583 8.2e-06 55.5 100 35.0


User provided reference genes

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