Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g15480 Fragaria vesca HOM05D006154 ORTHO05D007965 1.2e-29 132.5 67 100.0
FAN09G0481 Fragaria x ananassa HOM05D006154 ORTHO05D007965 1.2e-29 132.5 67 100.0
FAN14G5792 Fragaria x ananassa HOM05D006154 ORTHO05D007965 1.2e-29 132.5 67 100.0
FAN05G2896 Fragaria x ananassa HOM05D006154 ORTHO05D007965 3.9e-28 127.5 67 97.0
RcHm_v2.0_Chr3g0468961 Rosa chinensis HOM05D006154 ORTHO05D007965 1.1e-25 119.4 67 89.6
Atru.chr8.2571 Acer truncatum HOM05D006154 ORTHO05D007965 3.0e-20 101.3 67 77.6
GSVIVG01025642001 Vitis vinifera HOM05D006154 ORTHO05D007965 1.5e-19 99.0 67 76.1
Aa31LG1G21970 Aethionema arabicum HOM05D006154 ORTHO05D007965 2.5e-19 98.2 68 76.5
Thhalv10013263m.g Eutrema salsugineum HOM05D006154 ORTHO05D007965 2.5e-19 98.2 68 76.5
BcaB05g21853 Brassica carinata HOM05D006154 ORTHO05D007965 4.3e-19 97.4 68 76.5
BcaC06g32030 Brassica carinata HOM05D006154 ORTHO05D007965 5.6e-19 97.1 69 73.9
C02p00770 Brassica napus HOM05D006154 ORTHO05D007965 1.3e-18 95.9 69 75.4
BolC2t06075H Brassica oleracea HOM05D006154 ORTHO05D007965 1.3e-18 95.9 69 75.4
Thecc.05G055400 Theobroma cacao HOM05D006154 ORTHO05D007965 1.3e-18 95.9 66 74.2
AL6G12360 Arabidopsis lyrata HOM05D006154 ORTHO05D007965 1.6e-18 95.5 68 75.0
AT5G03070 Arabidopsis thaliana HOM05D006154 ORTHO05D007965 1.6e-18 95.5 68 73.5
MD12G1123100 Malus domestica HOM05D006154 ORTHO05D007965 2.1e-18 95.1 67 71.6
THA.LOC104816324 Tarenaya hassleriana HOM05D006154 ORTHO05D007965 2.1e-18 95.1 67 73.1
Carub.0006s0186 Capsella rubella HOM05D006154 ORTHO05D007965 2.8e-18 94.7 68 73.5
CARHR210260 Cardamine hirsuta HOM05D006154 ORTHO05D007965 2.8e-18 94.7 68 72.1
Duzib128G0314 Durio zibethinus HOM05D006154 ORTHO05D007965 2.8e-18 94.7 66 74.2
Ciclev10011496m.g Citrus clementina HOM05D006154 ORTHO05D007965 4.8e-18 94.0 67 70.1
Sp6g39620 Schrenkiella parvula HOM05D006154 ORTHO05D007965 4.8e-18 94.0 68 73.5
BcaC03g13033 Brassica carinata HOM05D006154 ORTHO05D007965 6.2e-18 93.6 69 75.4
Gohir.A13G079300 Gossypium hirsutum HOM05D006154 ORTHO05D007965 6.2e-18 93.6 66 72.7
Gohir.D13G095900 Gossypium hirsutum HOM05D006154 ORTHO05D007965 6.2e-18 93.6 66 72.7
Gorai.001G248100 Gossypium raimondii HOM05D006154 ORTHO05D007965 6.2e-18 93.6 66 72.7
Actinidia05266 Actinidia chinensis HOM05D006154 ORTHO05D007965 8.1e-18 93.2 67 68.7
CSS0029494 Camellia sinensis var. sinensis HOM05D006154 ORTHO05D007965 1.4e-17 92.4 67 70.1
Peaxi162Scf00472g00415 Petunia axillaris HOM05D006154 ORTHO05D007965 1.8e-17 92.0 68 70.6
Prupe.6G240100 Prunus persica HOM05D006154 ORTHO05D007965 1.8e-17 92.0 68 72.1
QL07p045129 Quercus lobata HOM05D006154 ORTHO05D007965 3.1e-17 91.3 69 72.5
Cpa.g.sc156.17 Carica papaya HOM05D006154 ORTHO05D007965 4.0e-17 90.9 67 67.2
Hma1.2p1_0111F.1_g053970 Hydrangea macrophylla HOM05D006154 ORTHO05D007965 6.9e-17 90.1 67 67.2
EL10Ac7g16509 Beta vulgaris HOM05D006154 ORTHO05D007965 9.0e-17 89.7 67 67.2
COL.COLO4_27066 Corchorus olitorius HOM05D006154 ORTHO05D007965 9.0e-17 89.7 66 69.7
Manes.08G004000 Manihot esculenta HOM05D006154 ORTHO05D007965 9.0e-17 89.7 61 73.8
Cfa017516 Carpinus fangiana HOM05D006154 ORTHO05D007965 1.2e-16 89.4 67 68.7
Psat6g070240 Pisum sativum HOM05D006154 ORTHO05D007965 1.5e-16 89.0 68 69.1
Dinv35724 Davidia involucrata HOM05D006154 ORTHO05D007965 3.4e-16 87.8 67 65.7
CAN.G915.15 Capsicum annuum HOM05D006154 ORTHO05D007965 1.7e-15 85.5 69 65.2
Rhsim04G0149800 Rhododendron simsii HOM05D006154 ORTHO05D007965 1.7e-15 85.5 70 62.9
CiPaw.09G179300 Carya illinoinensis HOM05D006154 ORTHO05D007965 2.2e-15 85.1 67 65.7
DCAR_009283 Daucus carota HOM05D006154 ORTHO05D007965 2.9e-15 84.7 63 63.5
HanXRQChr11g0350031 Helianthus annuus HOM05D006154 ORTHO05D007965 3.8e-15 84.3 69 63.8
Ah.15g092170 Amaranthus hybridus HOM05D006154 ORTHO05D007965 6.4e-15 83.6 68 63.2
Medtr1g066760 Medicago truncatula HOM05D006154 ORTHO05D007965 1.1e-14 82.8 68 67.6
TAR623G0796 Trochodendron aralioides HOM05D006154 ORTHO05D007965 1.1e-14 82.8 67 65.7
BraA02t04742Z Brassica rapa HOM05D006154 ORTHO05D007965 1.4e-14 82.4 93 55.9
Potri.016G086600 Populus trichocarpa HOM05D006154 ORTHO05D007965 1.9e-14 82.0 68 64.7
PGSC0003DMG400010467 Solanum tuberosum HOM05D006154 ORTHO05D007965 1.9e-14 82.0 71 62.0
Phvul.007G164500 Phaseolus vulgaris HOM05D006154 ORTHO05D007965 2.4e-14 81.6 68 64.7
Glyma.13G137700 Glycine max HOM05D006154 ORTHO05D007965 3.2e-14 81.3 67 65.7
TPR.G30248 Trifolium pratense HOM05D006154 ORTHO05D007965 3.2e-14 81.3 67 65.7
VMungo0720G0570 Vigna mungo HOM05D006154 ORTHO05D007965 3.2e-14 81.3 68 63.2
CSS0037460 Camellia sinensis var. sinensis HOM05D006154 ORTHO05D007965 4.2e-14 80.9 67 65.7
PSO384G0243 Papaver somniferum HOM05D006154 ORTHO05D007965 4.2e-14 80.9 71 64.8
Sc16g0003380 Simmondsia chinensis HOM05D006154 ORTHO05D007965 4.2e-14 80.9 67 58.2
Ca_11457_v3 Cicer arietinum L. HOM05D006154 ORTHO05D007965 9.3e-14 79.7 69 63.8
Lsat_1_v5_gn_1_54041 Lactuca sativa HOM05D006154 ORTHO05D007965 9.3e-14 79.7 68 58.8
CANSAT80G1906 Cannabis sativa HOM05D006154 ORTHO05D007965 1.2e-13 79.3 68 61.8
Solyc10g084270.2 Solanum lycopersicum HOM05D006154 ORTHO05D007965 1.6e-13 79.0 71 60.6
Sopen10g033720 Solanum pennellii HOM05D006154 ORTHO05D007965 1.6e-13 79.0 71 60.6
PGR142G2197 Punica granatum HOM05D006154 ORTHO05D007965 2.1e-13 78.6 68 66.2
Hund20188 Selenicereus undatus HOM05D006154 ORTHO05D007965 2.1e-13 78.6 67 56.7
Glyma.10G050200 Glycine max HOM05D006154 ORTHO05D007965 2.7e-13 78.2 67 64.2
Lalb_Chr02g0156311 Lupinus albus HOM05D006154 ORTHO05D007965 2.7e-13 78.2 63 65.1
Sed0025846 Sechium edule HOM05D006154 ORTHO05D007965 2.7e-13 78.2 67 65.7
Migut.L01665 Erythranthe guttata HOM05D006154 ORTHO05D007965 4.6e-13 77.4 69 58.0
Nn2g13020 Nelumbo nucifera HOM05D006154 ORTHO05D007965 6.0e-13 77.0 56 69.6
MSTRG.26722 Avicennia marina HOM05D006154 ORTHO05D007965 1.3e-12 75.9 67 55.2
ClCG02G024000 Citrullus lanatus HOM05D006154 ORTHO05D007965 1.3e-12 75.9 67 61.2
Eucgr.K03215 Eucalyptus grandis HOM05D006154 ORTHO05D007965 1.8e-12 75.5 56 71.4
MD04G1105600 Malus domestica HOM05D006154 ORTHO05D007965 1.8e-12 75.5 80 57.5
ATR0314G029 Amborella trichopoda HOM05D006154 ORTHO05D007965 3.0e-12 74.7 60 56.7
MELO3C014681.2 Cucumis melo HOM05D006154 ORTHO05D007965 3.0e-12 74.7 67 59.7
arahy.Tifrunner.gnm1.ann1.0R5WQW Arachis hypogaea HOM05D006154 ORTHO05D007965 6.7e-12 73.6 73 57.5
Lsat_1_v5_gn_6_30041 Lactuca sativa HOM05D006154 ORTHO05D007965 8.7e-12 73.2 67 55.2
vmacro08708 Vaccinium macrocarpon HOM05D006154 ORTHO05D007965 8.7e-12 73.2 52 63.5
arahy.Tifrunner.gnm1.ann1.T5YIFZ Arachis hypogaea HOM05D006154 ORTHO05D007965 1.5e-11 72.4 73 57.5
Sabra16G0092900 Salix brachista HOM05D006154 ORTHO05D007965 1.5e-11 72.4 49 75.5
SGA_v2.0_scaffold35G14156 Striga asiatica HOM05D006154 ORTHO05D007965 1.9e-11 72.0 69 59.4
Aqoxy6G01881 Aquilegia oxysepala HOM05D006154 ORTHO05D007965 2.5e-11 71.6 68 60.3
HanXRQChr13g0399551 Helianthus annuus HOM05D006154 ORTHO05D007965 5.6e-11 70.5 67 56.7
ECA233G0779 Erigeron canadensis HOM05D006154 ORTHO05D007965 7.4e-11 70.1 67 53.7
Lj5g0016415 Lotus japonicus HOM05D006154 ORTHO05D007965 2.1e-10 68.6 55 65.5
MBI14_g46388_MAGBIO Magnolia biondii HOM05D006154 ORTHO05D007965 1.1e-09 66.2 65 53.8
ECA248G0750 Erigeron canadensis HOM05D006154 ORTHO05D007965 1.8e-09 65.5 63 54.0
Nitab4.5_0003871g0060 Nicotiana tabacum HOM05D006154 ORTHO05D007965 2.4e-09 65.1 52 63.5
DCAR_017861 Daucus carota HOM05D006154 ORTHO05D035010 3.1e-09 64.7 52 55.8
Pp3c21_840 Physcomitrium patens HOM05D006154 ORTHO05D007965 3.1e-09 64.7 56 62.5
AUR62040031 Chenopodium quinoa HOM05D006154 ORTHO05D007965 9.0e-09 63.2 57 56.1
Pp3c18_21610 Physcomitrium patens HOM05D006154 ORTHO05D007965 1.5e-08 62.4 56 60.7
Os01g0158000 Oryza sativa ssp. japonica HOM05D006154 ORTHO05D007965 2.0e-08 62.0 77 45.5
Zm00001eb336070 Zea mays HOM05D006154 ORTHO05D007965 2.0e-08 62.0 58 55.2
CDE04G0384 Ceratophyllum demersum HOM05D006154 ORTHO05D007965 3.4e-08 61.2 54 53.7
HPP92_012050 Vanilla planifolia HOM05D006154 ORTHO05D007965 4.5e-08 60.8 65 46.2
Cc06_g03650 Coffea canephora HOM05D006154 ORTHO05D007965 7.6e-08 60.1 65 52.3
SalBow4G2026 Salvia bowleyana HOM05D006154 ORTHO05D007965 2.9e-07 58.2 78 46.2
SalBow4G2224 Salvia bowleyana HOM05D006154 ORTHO05D007965 2.9e-07 58.2 78 46.2
Mapoly0226s0004 Marchantia polymorpha HOM05D006154 ORTHO05D007965 1.1e-06 56.2 58 53.4
SHI12542 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-06 55.1 40 65.0
unitig_0.g691 Utricularia gibba HOM05D006154 ORTHO05D007095 9.3e-06 53.1 56 48.2


User provided reference genes

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