Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 4.6e-101 371.3 198 100.0
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 4.6e-101 371.3 198 100.0
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 5.1e-60 235.0 196 65.3
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.1e-60 235.0 196 65.8
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.1e-60 235.0 196 65.3
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 1.6e-58 229.9 197 62.9
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 6.1e-53 211.5 175 63.4
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.6e-45 186.8 101 95.0
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 1.0e-44 184.1 101 97.0
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 3.9e-44 182.2 167 58.1
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 2.5e-43 179.5 183 55.7
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 7.4e-43 177.9 168 56.0
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 1.5e-40 170.2 167 55.1
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 1.1e-33 147.5 175 52.0
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 3.8e-31 139.0 181 47.5
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 4.2e-30 135.6 185 48.1
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.0e-28 129.4 151 42.4
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 5.3e-25 118.6 181 34.8
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.6e-24 117.1 169 36.1
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 1.0e-23 114.4 160 39.4
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 2.2e-23 113.2 168 35.1
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 3.8e-23 112.5 160 39.4
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 8.5e-23 111.3 175 36.6
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 9.4e-22 107.8 144 39.6
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.0e-20 102.8 149 34.9
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 4.0e-20 102.4 124 46.8
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.8e-20 101.3 144 36.1
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.0e-19 100.1 176 37.5
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.4e-19 99.0 140 36.4
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 7.5e-19 98.2 124 45.2
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.2e-18 96.7 147 36.7
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 3.7e-18 95.9 165 35.8
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 8.3e-18 94.7 169 36.1
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 8.3e-18 94.7 140 34.3
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 4.1e-17 92.4 180 34.4
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 9.1e-17 91.3 179 38.5
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 7.7e-16 88.2 174 29.3
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 1.3e-15 87.4 166 32.5
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 2.2e-15 86.7 182 36.8
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 3.8e-15 85.9 173 34.1
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.1e-14 84.3 147 36.1
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.2e-14 82.8 94 41.5
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.5e-14 82.0 93 41.9
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 1.2e-13 80.9 176 32.4
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 4.7e-13 79.0 140 35.0
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-12 77.4 132 34.8
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.8e-12 77.0 132 31.1
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 1.8e-12 77.0 168 32.1
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 6.8e-12 75.1 139 30.2
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 1.2e-11 74.3 141 32.6
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.6e-11 73.2 119 33.6
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 3.4e-11 72.8 159 32.1
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.7e-11 72.0 132 31.1
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 7.5e-11 71.6 144 29.2
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 3.7e-10 69.3 169 30.2
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 1.1e-09 67.8 159 30.2
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 1.4e-09 67.4 126 31.0
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 1.8e-09 67.0 143 31.5
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 1.6e-08 63.9 118 32.2
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 4.5e-08 62.4 174 29.3
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 5.9e-08 62.0 124 28.2
A06p06100 Brassica napus HOM05D013394 ORTHO05D009712 7.7e-08 61.6 143 29.4
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.7e-08 61.6 171 27.5
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 7.7e-08 61.6 171 27.5
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 7.7e-08 61.6 170 26.5
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.0e-07 61.2 171 27.5
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 1.0e-07 61.2 138 28.3
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 1.3e-07 60.8 179 27.9
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.3e-07 60.8 92 37.0
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 1.7e-07 60.5 147 34.0
TAR633G1553 Trochodendron aralioides HOM05D012615 ORTHO05D010044 1.7e-07 60.5 157 28.7
BraA06t23823Z Brassica rapa HOM05D013394 ORTHO05D009712 2.3e-07 60.1 143 28.7
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 2.9e-07 59.7 157 28.0
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 2.9e-07 59.7 150 26.0
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 5.0e-07 58.9 143 27.3
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 5.0e-07 58.9 177 28.2
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 5.0e-07 58.9 159 27.0
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 6.6e-07 58.5 160 25.6
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 6.6e-07 58.5 158 27.2
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 6.6e-07 58.5 143 26.6
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 6.6e-07 58.5 99 31.3
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 8.6e-07 58.2 152 29.6
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.1e-06 57.8 138 26.8
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.5e-06 57.4 142 26.8
BcaC05g24789 Brassica carinata HOM05D013394 ORTHO05D009712 1.9e-06 57.0 143 26.6
BolC5t29492H Brassica oleracea HOM05D013394 ORTHO05D009712 1.9e-06 57.0 143 26.6
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 1.9e-06 57.0 164 26.2
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.9e-06 57.0 164 28.0
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 2.5e-06 56.6 171 25.1
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 2.5e-06 56.6 146 26.0
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 2.5e-06 56.6 135 29.6
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 3.3e-06 56.2 162 29.0
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 3.3e-06 56.2 171 24.6
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 3.3e-06 56.2 80 35.0
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 4.3e-06 55.8 177 26.0
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 4.3e-06 55.8 179 24.0
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 5.6e-06 55.5 99 28.3
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 7.3e-06 55.1 96 33.3
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 7.3e-06 55.1 140 28.6
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 9.5e-06 54.7 129 28.7
COL.COLO4_23184 Corchorus olitorius HOM05D008191 ORTHO05D010044 9.5e-06 54.7 110 31.8


User provided reference genes

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