Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5665 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.7e-79 298.5 143 100.0
FvH4_6g06590 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-76 289.7 143 97.9
FAN05G0889 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-72 276.6 142 93.0
FAN09G1175 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.8e-60 235.3 134 87.3
FAN02G0488 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.2e-36 156.0 114 71.9
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 7.0e-35 151.0 134 55.2
RcHm_v2.0_Chr3g0455991 Rosa chinensis HOM05D000007 ORTHO05D000039 2.0e-34 149.4 143 51.7
FAN14G5073 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.8e-21 104.8 133 39.1
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 1.3e-20 103.6 149 42.3
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 3.7e-20 102.1 140 39.3
FvH4_5g09390 Fragaria vesca HOM05D003032 ORTHO05D003456 4.9e-20 101.7 138 42.8
FAN18G1730 Fragaria x ananassa HOM05D003032 ORTHO05D003456 4.9e-20 101.7 138 42.8
FvH4_6g06850 Fragaria vesca HOM05D000007 ORTHO05D000039 9.2e-19 97.4 138 40.6
FvH4_6g06801 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-18 97.1 135 40.7
FAN14G4334 Fragaria x ananassa HOM05D003032 ORTHO05D003456 3.5e-18 95.5 129 42.6
FvH4_6g06663 Fragaria vesca HOM05D000007 ORTHO05D000039 3.0e-17 92.4 134 39.6
Prupe.6G319000 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-16 90.5 133 37.6
RcHm_v2.0_Chr3g0455791 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-16 90.1 77 53.2
FvH4_6g06831 Fragaria vesca HOM05D000007 ORTHO05D000039 1.9e-16 89.7 139 38.1
FAN20G1368 Fragaria x ananassa HOM05D003032 ORTHO05D003456 1.9e-16 89.7 144 38.2
RcHm_v2.0_Chr3g0456131 Rosa chinensis HOM05D000007 ORTHO05D000039 2.5e-16 89.4 128 38.3
RcHm_v2.0_Chr7g0233181 Rosa chinensis HOM05D003032 ORTHO05D000039 2.5e-16 89.4 134 38.1
RcHm_v2.0_Chr3g0455931 Rosa chinensis HOM05D000007 ORTHO05D000039 4.3e-16 88.6 134 35.8
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 5.6e-16 88.2 141 38.3
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 5.6e-16 88.2 136 39.7
FvH4_6g06700 Fragaria vesca HOM05D000007 ORTHO05D000039 9.5e-16 87.4 132 35.6
RcHm_v2.0_Chr3g0457451 Rosa chinensis HOM05D000007 ORTHO05D000039 9.5e-16 87.4 149 38.9
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-15 87.0 135 37.8
MD04G1199200 Malus domestica HOM05D000007 ORTHO05D000039 4.7e-15 85.1 140 35.7
FvH4_6g06791 Fragaria vesca HOM05D000007 ORTHO05D000039 3.1e-14 82.4 138 37.0
FAN08G1675 Fragaria x ananassa HOM05D003032 ORTHO05D000039 4.0e-14 82.0 136 33.8
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 6.8e-14 81.3 138 39.1
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 8.9e-14 80.9 135 34.1
RcHm_v2.0_Chr3g0458461 Rosa chinensis HOM05D003032 ORTHO05D003456 8.9e-14 80.9 138 35.5
FvH4_5g33841 Fragaria vesca HOM05D003032 ORTHO05D003456 3.4e-13 79.0 136 33.1
FvH4_6g06840 Fragaria vesca HOM05D000007 ORTHO05D000039 5.8e-13 78.2 116 37.1
FAN02G2443 Fragaria x ananassa HOM05D003032 ORTHO05D000039 1.7e-12 76.6 137 37.2
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 2.2e-12 76.3 140 34.3
FAN24G1599 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.7e-12 75.5 141 32.6
RcHm_v2.0_Chr3g0456091 Rosa chinensis HOM05D000007 ORTHO05D000039 8.3e-12 74.3 137 36.5
FvH4_6g07720 Fragaria vesca HOM05D000007 ORTHO05D000039 1.1e-11 73.9 124 35.5
FAN14G1928 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-11 73.9 124 35.5
Prupe.6G319800 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-11 73.9 138 33.3
MD09G1130700 Malus domestica HOM05D000007 ORTHO05D000039 4.1e-11 72.0 137 32.8
FvH4_6g16041 Fragaria vesca HOM05D000007 ORTHO05D000039 5.4e-11 71.6 141 36.9
FAN14G5293 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.4e-11 71.6 141 36.9
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 9.2e-11 70.9 90 41.1
Prupe.6G318300 Prunus persica HOM05D000007 ORTHO05D000039 9.2e-11 70.9 139 36.7
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.1e-10 69.7 139 33.8
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 4.6e-10 68.6 135 34.1
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 4.6e-10 68.6 136 35.3
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 1.3e-09 67.0 137 32.8
FvH4_2g10221 Fragaria vesca HOM05D000007 ORTHO05D000039 2.3e-09 66.2 140 33.6
MD17G1252000 Malus domestica HOM05D000007 ORTHO05D000039 2.3e-09 66.2 143 32.2
Thecc.04G089800 Theobroma cacao HOM05D000007 ORTHO05D000039 2.3e-09 66.2 137 34.3
MD17G1252200 Malus domestica HOM05D000007 ORTHO05D000039 5.1e-09 65.1 85 40.0
MD00G1054600 Malus domestica HOM05D000007 ORTHO05D000039 6.6e-09 64.7 137 32.1
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 6.6e-09 64.7 137 29.9
MD17G1252800 Malus domestica HOM05D000007 ORTHO05D000039 6.6e-09 64.7 88 38.6
MD17G1254200 Malus domestica HOM05D000007 ORTHO05D000039 8.6e-09 64.3 86 40.7
MD17G1254700 Malus domestica HOM05D000007 ORTHO05D000039 8.6e-09 64.3 85 40.0
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 8.6e-09 64.3 90 37.8
FAN09G1013 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-08 63.9 138 31.2
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.5e-08 63.5 137 34.3
FvH4_6g07700 Fragaria vesca HOM05D003032 ORTHO05D003456 1.5e-08 63.5 87 41.4
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-08 63.5 135 31.9
FAN09G0047 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.9e-08 63.2 126 37.3
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 4.3e-08 62.0 136 29.4
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 4.3e-08 62.0 87 36.8
MD15G1153400 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-08 61.6 137 30.7
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-08 61.6 87 36.8
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 5.6e-08 61.6 135 32.6
FAN14G0234 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.3e-08 61.2 138 30.4
MD17G1256100 Malus domestica HOM05D000007 ORTHO05D000039 7.3e-08 61.2 137 28.5
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 7.3e-08 61.2 141 33.3
ClCG10G015170 Citrullus lanatus HOM05D000007 ORTHO05D000039 9.5e-08 60.8 136 33.1
FAN02G2224 Fragaria x ananassa HOM05D000007 ORTHO05D000039 9.5e-08 60.8 138 28.3
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 9.5e-08 60.8 85 38.8
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 1.2e-07 60.5 142 33.8
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 2.8e-07 59.3 132 31.8
Duzib147G0121 Durio zibethinus HOM05D000007 ORTHO05D000039 2.8e-07 59.3 144 31.9
FvH4_6g06630 Fragaria vesca HOM05D000007 ORTHO05D000039 2.8e-07 59.3 138 30.4
Gohir.D04G045600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.8e-07 59.3 140 30.0
Gorai.012G050800 Gossypium raimondii HOM05D000007 ORTHO05D000039 3.6e-07 58.9 140 30.0
MD17G1253800 Malus domestica HOM05D000007 ORTHO05D000039 3.6e-07 58.9 137 29.2
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 4.7e-07 58.5 137 33.6
Sed0015533 Sechium edule HOM05D000007 ORTHO05D000039 6.2e-07 58.2 137 31.4
MELO3C009400.2 Cucumis melo HOM05D000007 ORTHO05D000039 1.1e-06 57.4 116 32.8
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-06 57.4 137 34.3
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-06 57.4 137 34.3
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 1.4e-06 57.0 87 34.5
QL04p029136 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-06 57.0 90 34.4
Hma1.2p1_0901F.1_g234670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 2.4e-06 56.2 114 30.7
Hma1.2p1_0901F.1_g234685 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 2.4e-06 56.2 114 30.7
Hma1.2p1_1150F.1_g261840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 2.4e-06 56.2 114 30.7
MD17G1256300 Malus domestica HOM05D000007 ORTHO05D000039 3.1e-06 55.8 146 31.5
Thecc.04G089700 Theobroma cacao HOM05D000007 ORTHO05D000039 3.1e-06 55.8 138 30.4
CANSAT64G2524 Cannabis sativa HOM05D000007 ORTHO05D000039 4.0e-06 55.5 114 30.7
Dinv01035 Davidia involucrata HOM05D000007 ORTHO05D000039 4.0e-06 55.5 108 34.3
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-06 55.1 130 31.5
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 5.2e-06 55.1 137 27.0
MSTRG.14886 Avicennia marina HOM05D000007 ORTHO05D000039 6.8e-06 54.7 112 31.2
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 6.8e-06 54.7 137 31.4
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 8.9e-06 54.3 137 30.7
Lalb_Chr16g0387961 Lupinus albus HOM05D000007 ORTHO05D020439 8.9e-06 54.3 118 29.7
RcHm_v2.0_Chr3g0455781 Rosa chinensis HOM05D000007 ORTHO05D000039 8.9e-06 54.3 42 64.3


User provided reference genes

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