Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.9e-81 305.8 162 100.0
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.2e-60 235.0 137 93.4
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.3e-60 233.8 137 92.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.1e-59 232.6 137 92.0
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.0e-58 230.3 137 91.2
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-57 226.5 137 90.5
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 2.0e-46 189.5 137 76.6
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.9e-42 175.3 116 84.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 8.8e-34 147.5 147 61.2
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 3.2e-28 129.0 146 56.8
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 6.1e-27 124.8 145 55.9
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 2.9e-21 105.9 71 81.7
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.5e-20 102.8 146 50.0
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 7.2e-20 101.3 150 48.7
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 9.4e-20 100.9 120 55.0
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.0e-18 97.4 141 48.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 5.7e-17 91.7 152 42.1
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 9.8e-17 90.9 112 51.8
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 9.8e-17 90.9 143 44.8
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 1.3e-16 90.5 114 50.9
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.7e-16 90.1 146 44.5
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 1.7e-16 90.1 113 48.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 2.8e-16 89.4 121 47.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.7e-16 89.0 77 62.3
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 4.8e-16 88.6 140 42.9
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 8.3e-16 87.8 82 56.1
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.1e-15 87.4 121 46.3
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.4e-15 87.0 140 44.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.4e-15 87.0 72 62.5
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.4e-15 87.0 97 52.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.8e-15 86.7 143 44.1
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 2.4e-15 86.3 106 50.0
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.4e-15 86.3 150 42.7
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.1e-15 85.9 142 43.7
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 3.1e-15 85.9 120 48.3
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 4.1e-15 85.5 92 55.4
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 4.1e-15 85.5 83 57.8
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 5.4e-15 85.1 65 69.2
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 5.4e-15 85.1 106 50.0
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 7.0e-15 84.7 68 67.6
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 7.0e-15 84.7 72 62.5
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 7.0e-15 84.7 68 66.2
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 7.0e-15 84.7 149 43.0
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 9.1e-15 84.3 137 42.3
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.2e-14 84.0 144 43.8
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.7e-14 82.8 126 43.7
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 3.5e-14 82.4 69 63.8
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.5e-14 82.0 76 57.9
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 4.5e-14 82.0 77 64.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 5.9e-14 81.6 76 55.3
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.9e-14 81.6 104 51.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 7.7e-14 81.3 92 51.1
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 7.7e-14 81.3 148 39.9
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.0e-13 80.9 105 47.6
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-13 80.5 108 49.1
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.9e-13 79.3 94 50.0
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 2.9e-13 79.3 137 40.1
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.9e-13 79.3 75 61.3
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 3.8e-13 79.0 150 42.0
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 3.8e-13 79.0 138 44.2
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 3.8e-13 79.0 114 43.9
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.8e-13 79.0 148 42.6
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.8e-13 79.0 98 44.9
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 6.5e-13 78.2 73 61.6
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.1e-12 77.4 127 41.7
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.1e-12 77.4 112 47.3
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 1.9e-12 76.6 65 66.2
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 2.5e-12 76.3 89 53.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 3.2e-12 75.9 65 66.2
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 4.2e-12 75.5 61 65.6
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 5.5e-12 75.1 94 46.8
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 5.5e-12 75.1 114 43.9
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 5.5e-12 75.1 69 62.3
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 7.2e-12 74.7 117 43.6
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.2e-12 74.7 66 65.2
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.2e-12 74.7 69 60.9
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.2e-12 74.7 65 63.1
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.2e-11 73.9 129 41.1
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.6e-11 73.6 95 50.5
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.6e-11 73.6 73 58.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.7e-11 72.8 91 48.4
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 2.7e-11 72.8 143 43.4
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.7e-11 72.8 99 49.5
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.7e-11 72.0 67 58.2
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 4.7e-11 72.0 153 38.6
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 4.7e-11 72.0 156 41.0
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.0e-11 71.2 123 41.5
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 8.0e-11 71.2 87 49.4
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 8.0e-11 71.2 111 43.2
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.0e-10 70.9 149 38.3
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-10 70.5 88 50.0
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.4e-10 70.5 144 38.9
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.8e-10 70.1 75 52.0
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.3e-10 69.7 137 39.4
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 2.3e-10 69.7 142 42.3
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.2e-10 68.6 89 51.7
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 6.8e-10 68.2 141 42.6
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.2e-09 67.4 146 38.4
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.5e-09 67.0 132 37.1
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.6e-09 66.2 140 36.4
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 2.6e-09 66.2 65 56.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 2.6e-09 66.2 110 44.5
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.4e-09 65.9 93 46.2
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 7.5e-09 64.7 67 50.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 7.5e-09 64.7 67 50.7
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.7e-08 63.5 94 43.6
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.7e-08 63.5 76 50.0
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.7e-08 63.5 76 50.0
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.7e-08 63.5 76 50.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.7e-08 63.5 69 56.5
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.2e-08 63.2 78 53.8
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 2.2e-08 63.2 71 53.5
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 2.8e-08 62.8 156 35.9
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.7e-08 62.4 74 52.7
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 4.9e-08 62.0 140 35.7
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 4.9e-08 62.0 71 50.7
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.1e-07 60.8 65 60.0
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.1e-07 60.8 122 38.5
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.6e-06 57.0 73 46.6
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.0e-06 56.6 121 38.8
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 4.5e-06 55.5 53 56.6
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.9e-06 55.1 112 39.3


User provided reference genes

Program Settings