Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.2e-81 304.3 151 100.0
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 3.0e-76 288.5 161 92.5
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 5.2e-73 277.7 161 90.1
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.6e-72 275.4 156 91.0
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 1.3e-55 219.9 157 76.4
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 5.9e-40 167.9 174 59.8
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 1.2e-32 143.7 155 58.1
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 2.0e-32 142.9 169 55.0
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 7.7e-32 141.0 154 56.5
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 1.3e-31 140.2 173 54.3
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 1.2e-29 133.7 185 49.7
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 2.7e-29 132.5 177 52.0
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 7.9e-29 131.0 163 52.8
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 1.4e-28 130.2 172 51.7
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 3.0e-28 129.0 165 53.9
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 6.7e-28 127.9 151 53.6
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 8.8e-28 127.5 174 50.0
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 5.7e-27 124.8 172 49.4
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 2.2e-26 122.9 166 50.6
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 2.2e-26 122.9 170 48.8
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 2.2e-26 122.9 174 47.7
FvH4_4g05631 Fragaria vesca HOM05D017723 ORTHO05D007769 2.8e-26 122.5 115 64.3
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 3.7e-26 122.1 172 48.8
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 4.8e-26 121.7 180 48.3
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 1.1e-25 120.6 172 48.3
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 4.1e-25 118.6 154 51.3
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 4.1e-25 118.6 181 48.6
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 6.9e-25 117.9 175 48.0
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 1.5e-24 116.7 162 52.5
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 4.5e-24 115.2 174 46.6
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 5.9e-24 114.8 172 48.3
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 7.7e-24 114.4 138 51.4
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 7.7e-24 114.4 167 46.7
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 7.7e-24 114.4 152 49.3
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 1.0e-23 114.0 158 50.0
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 1.0e-23 114.0 166 47.6
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 1.3e-23 113.6 167 46.1
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 1.3e-23 113.6 176 47.2
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 1.3e-23 113.6 191 46.1
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 1.7e-23 113.2 176 44.3
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.9e-23 112.5 126 55.6
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 2.9e-23 112.5 176 47.2
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 3.8e-23 112.1 162 46.9
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 3.8e-23 112.1 168 47.0
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 5.0e-23 111.7 168 46.4
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 6.5e-23 111.3 180 48.3
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 6.5e-23 111.3 148 49.3
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 8.5e-23 110.9 171 45.0
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 8.5e-23 110.9 168 46.4
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 8.5e-23 110.9 168 45.8
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 8.5e-23 110.9 157 49.0
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 1.1e-22 110.5 163 46.6
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 1.1e-22 110.5 159 48.4
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 1.4e-22 110.2 171 45.6
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 2.5e-22 109.4 171 45.0
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 2.5e-22 109.4 171 45.0
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 2.5e-22 109.4 161 47.2
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 2.5e-22 109.4 154 48.7
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 2.5e-22 109.4 171 46.2
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 4.2e-22 108.6 124 54.0
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 4.2e-22 108.6 168 47.0
FAN25G2660 Fragaria x ananassa HOM05D017723 ORTHO05D007769 5.5e-22 108.2 120 57.5
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 9.4e-22 107.5 173 46.8
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 1.2e-21 107.1 166 46.4
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 1.6e-21 106.7 161 46.6
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 1.6e-21 106.7 182 42.3
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 1.6e-21 106.7 172 44.2
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 2.1e-21 106.3 158 46.2
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 3.6e-21 105.5 148 48.6
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 4.7e-21 105.1 180 46.7
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 6.1e-21 104.8 123 54.5
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 6.1e-21 104.8 125 52.8
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 1.8e-20 103.2 155 49.0
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 2.3e-20 102.8 151 47.0
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 3.0e-20 102.4 152 51.3
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 3.0e-20 102.4 159 46.5
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 5.2e-20 101.7 166 41.6
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 6.7e-20 101.3 169 43.8
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 8.8e-20 100.9 165 47.3
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 1.5e-19 100.1 155 45.8
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.0e-19 99.8 175 44.0
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 2.0e-19 99.8 153 47.7
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 5.7e-19 98.2 126 52.4
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 5.7e-19 98.2 142 46.5
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 7.4e-19 97.8 160 46.2
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 7.4e-19 97.8 153 45.1
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 9.7e-19 97.4 126 52.4
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 1.3e-18 97.1 138 51.4
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 1.7e-18 96.7 121 52.1
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 2.2e-18 96.3 190 41.6
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 2.8e-18 95.9 160 45.6
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 3.7e-18 95.5 161 45.3
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 1.4e-17 93.6 173 41.6
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 5.3e-17 91.7 86 57.0
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 5.3e-17 91.7 134 47.8
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.0e-17 91.3 93 59.1
FvH4_6g22601 Fragaria vesca HOM05D017723 ORTHO05D035582 5.9e-16 88.2 80 66.2
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 5.9e-16 88.2 167 40.7
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 2.2e-15 86.3 155 44.5
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 6.5e-15 84.7 149 40.3
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 1.1e-14 84.0 141 44.0
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 1.9e-14 83.2 142 43.7
FvH4_1g12841 Fragaria vesca HOM05D017723 ORTHO05D007769 5.5e-14 81.6 79 62.0
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 9.4e-14 80.9 169 41.4
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 9.4e-14 80.9 114 53.5
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 1.0e-12 77.4 87 54.0
PGR102G2442 Punica granatum HOM05D006672 ORTHO05D007769 1.0e-12 77.4 154 42.2
FAN16G2610 Fragaria x ananassa HOM05D017723 ORTHO05D007769 3.0e-12 75.9 65 69.2
FAN14G0882 Fragaria x ananassa HOM05D017723 ORTHO05D035582 1.2e-11 73.9 102 52.0
FAN14G3105 Fragaria x ananassa HOM05D017723 ORTHO05D035582 1.2e-11 73.9 75 64.0
FvH4_5g24053 Fragaria vesca HOM05D031413 ORTHO05D029585 1.5e-11 73.6 87 55.2
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 1.5e-11 73.6 176 39.8
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 4.4e-11 72.0 113 46.0
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 4.4e-11 72.0 66 57.6
Mapoly0141s0006 Marchantia polymorpha HOM05D006672 ORTHO05D007769 7.5e-11 71.2 155 38.1
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 9.7e-11 70.9 142 41.5
ATR0829G196 Amborella trichopoda HOM05D006672 ORTHO05D007769 1.3e-10 70.5 139 35.3
arahy.Tifrunner.gnm1.ann1.DAY3RM Arachis hypogaea HOM05D006672 ORTHO05D007769 2.2e-10 69.7 125 43.2
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 3.7e-10 68.9 68 60.3
SEGI_22972 Sequoiadendron giganteum HOM05D006672 ORTHO05D007769 6.3e-10 68.2 159 40.9
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 1.1e-09 67.4 88 50.0
FAN06G1160 Fragaria x ananassa HOM05D031413 ORTHO05D029585 2.4e-09 66.2 61 62.3
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 3.1e-09 65.9 137 43.8
FAN02G2879 Fragaria x ananassa HOM05D031413 ORTHO05D029585 5.3e-09 65.1 60 65.0
PGR102G0682 Punica granatum HOM05D006672 ORTHO05D007769 4.5e-08 62.0 104 44.2
Atru.chr1.3332 Acer truncatum HOM05D006672 ORTHO05D007769 5.9e-08 61.6 129 43.4
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 5.9e-08 61.6 144 38.2
FvH4_7g17200 Fragaria vesca HOM05D031413 ORTHO05D029585 2.9e-07 59.3 105 44.8
Pp3c1_40010 Physcomitrium patens HOM05D006672 ORTHO05D007769 2.9e-07 59.3 154 33.8
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 1.1e-06 57.4 44 70.5
Os09g0344700 Oryza sativa ssp. japonica HOM05D006672 ORTHO05D007769 1.9e-06 56.6 138 35.5
SMO364G0119 Selaginella moellendorffii HOM05D006672 ORTHO05D007769 2.5e-06 56.2 144 35.4
AagrBONN_evm.TU.Sc2ySwM_362.2137 Anthoceros agrestis HOM05D006672 ORTHO05D007769 7.2e-06 54.7 159 33.3


User provided reference genes

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