Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5320 Fragaria x ananassa HOM05D001521 ORTHO05D001342 2.1e-64 248.8 124 100.0
FAN02G0887 Fragaria x ananassa HOM05D001521 ORTHO05D001342 4.1e-55 218.0 111 97.3
FAN05G2510 Fragaria x ananassa HOM05D001521 ORTHO05D001342 8.4e-53 210.3 111 94.6
FvH4_6g45770 Fragaria vesca HOM05D001521 ORTHO05D001342 5.5e-36 154.5 108 74.1
FAN14G0309 Fragaria x ananassa HOM05D001521 ORTHO05D001342 5.5e-36 154.5 108 74.1
RcHm_v2.0_Chr2g0163671 Rosa chinensis HOM05D001521 ORTHO05D001342 2.6e-33 145.6 108 68.5
RcHm_v2.0_Chr2g0163691 Rosa chinensis HOM05D001521 ORTHO05D001342 3.7e-32 141.7 112 67.9
RcHm_v2.0_Chr2g0163741 Rosa chinensis HOM05D001521 ORTHO05D001342 4.8e-32 141.4 103 68.0
RcHm_v2.0_Chr2g0163591 Rosa chinensis HOM05D001521 ORTHO05D001342 6.3e-32 141.0 103 68.0
RcHm_v2.0_Chr2g0163571 Rosa chinensis HOM05D001521 ORTHO05D001342 7.2e-28 127.5 103 67.0
RcHm_v2.0_Chr2g0163631 Rosa chinensis HOM05D001521 ORTHO05D001342 5.2e-26 121.3 109 58.7
RcHm_v2.0_Chr2g0163661 Rosa chinensis HOM05D001521 ORTHO05D001342 5.2e-26 121.3 109 58.7
RcHm_v2.0_Chr5g0072501 Rosa chinensis HOM05D001521 ORTHO05D001342 1.5e-25 119.8 105 56.2
FvH4_6g45591 Fragaria vesca HOM05D001521 ORTHO05D001342 5.7e-25 117.9 108 56.5
FAN09G4373 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.2e-22 110.2 112 49.1
FvH4_6g46030 Fragaria vesca HOM05D001521 ORTHO05D001342 7.7e-22 107.5 106 50.9
FvH4_6g46040 Fragaria vesca HOM05D001521 ORTHO05D001342 7.7e-22 107.5 106 50.9
FAN05G0146 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.8e-21 105.1 106 50.9
FAN09G4306 Fragaria x ananassa HOM05D001521 ORTHO05D001342 5.0e-21 104.8 106 50.0
FAN05G2842 Fragaria x ananassa HOM05D001521 ORTHO05D001342 6.5e-21 104.4 106 50.0
FAN09G4470 Fragaria x ananassa HOM05D001521 ORTHO05D001342 2.2e-16 89.4 89 50.6
RcHm_v2.0_Chr5g0011821 Rosa chinensis HOM05D001521 ORTHO05D001342 1.8e-15 86.3 46 89.1
RcHm_v2.0_Chr5g0011831 Rosa chinensis HOM05D001521 ORTHO05D001342 1.8e-15 86.3 46 89.1
RcHm_v2.0_Chr5g0011841 Rosa chinensis HOM05D001521 ORTHO05D001342 1.8e-15 86.3 46 89.1
Hma1.2p1_0225F.1_g094780 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 2.4e-15 85.9 98 44.9
Dinv37718 Davidia involucrata HOM05D001521 ORTHO05D001342 2.7e-14 82.4 98 45.9
Hma1.2p1_1715F.1_g299020 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 2.7e-14 82.4 105 42.9
ClCG06G001040 Citrullus lanatus HOM05D001521 ORTHO05D001342 4.5e-14 81.6 103 45.6
MELO3C022434.2 Cucumis melo HOM05D001521 ORTHO05D001342 2.9e-13 79.0 95 41.1
Prupe.2G097700 Prunus persica HOM05D001521 ORTHO05D001342 2.9e-13 79.0 98 45.9
TAR371G0196 Trochodendron aralioides HOM05D001521 ORTHO05D001342 2.9e-13 79.0 98 42.9
TAR636G2451 Trochodendron aralioides HOM05D001521 ORTHO05D001342 3.8e-13 78.6 99 42.4
TAR383G0835 Trochodendron aralioides HOM05D001521 ORTHO05D001342 6.5e-13 77.8 98 41.8
GSVIVG01028606001 Vitis vinifera HOM05D001521 ORTHO05D001342 6.5e-13 77.8 98 42.9
FvH4_6g05700 Fragaria vesca HOM05D001521 ORTHO05D001342 1.1e-12 77.0 98 42.9
FAN05G4953 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.1e-12 77.0 98 42.9
FAN14G2703 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.1e-12 77.0 98 42.9
RcHm_v2.0_Chr3g0479441 Rosa chinensis HOM05D001521 ORTHO05D001342 1.5e-12 76.6 100 42.0
Cpa.g.sc567.1 Carica papaya HOM05D001521 ORTHO05D001342 1.9e-12 76.3 98 44.9
FAN09G0517 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.9e-12 76.3 98 41.8
Oeu035081.1 Olea europaea HOM05D001521 ORTHO05D001342 1.9e-12 76.3 103 39.8
GSVIVG01028618001 Vitis vinifera HOM05D001521 ORTHO05D001342 2.5e-12 75.9 98 41.8
Dinv04994 Davidia involucrata HOM05D001521 ORTHO05D001342 5.5e-12 74.7 76 48.7
CsaV3_6G006920 Cucumis sativus L. HOM05D001521 ORTHO05D001342 7.2e-12 74.3 78 44.9
Dinv05622 Davidia involucrata HOM05D001521 ORTHO05D001342 7.2e-12 74.3 76 48.7
Dinv12865 Davidia involucrata HOM05D001521 ORTHO05D001342 9.4e-12 73.9 98 40.8
Rhsim01G0106900 Rhododendron simsii HOM05D000041 ORTHO05D000452 9.4e-12 73.9 99 43.4
CSS0010403 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 1.6e-11 73.2 99 43.4
Hma1.2p1_0033F.1_g020970 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.6e-11 73.2 100 43.0
Hma1.2p1_0033F.1_g020980 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.6e-11 73.2 100 43.0
GSVIVG01028617001 Vitis vinifera HOM05D001521 ORTHO05D001342 2.7e-11 72.4 76 46.1
Rhsim01G0107000 Rhododendron simsii HOM05D000041 ORTHO05D000061 3.6e-11 72.0 101 44.6
Rhsim08G0106700 Rhododendron simsii HOM05D000041 ORTHO05D000452 3.6e-11 72.0 101 44.6
ClCG03G004470 Citrullus lanatus HOM05D001521 ORTHO05D001342 4.7e-11 71.6 84 44.0
Prupe.2G087400 Prunus persica HOM05D001521 ORTHO05D001342 4.7e-11 71.6 98 41.8
Cpa.g.sc83.14 Carica papaya HOM05D001521 ORTHO05D001342 6.1e-11 71.2 98 41.8
Lj1C599T6 Lonicera japonica HOM05D001521 ORTHO05D001342 6.1e-11 71.2 98 38.8
Cpa.g.sc264.7 Carica papaya HOM05D001521 ORTHO05D001342 8.0e-11 70.9 98 37.8
Hma1.2p1_3600F.1_g336970 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.0e-10 70.5 107 35.5
Sed0020102 Sechium edule HOM05D001521 ORTHO05D001342 1.0e-10 70.5 99 37.4
Lj1C599T5 Lonicera japonica HOM05D001521 ORTHO05D001342 1.4e-10 70.1 98 38.8
Cpa.g.sc83.17 Carica papaya HOM05D001521 ORTHO05D001342 1.8e-10 69.7 98 40.8
Cpa.g.sc83.19 Carica papaya HOM05D001521 ORTHO05D001342 1.8e-10 69.7 98 40.8
Hma1.2p1_0439F.1_g153190 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.8e-10 69.7 99 38.4
TWI38G1624 Tripterygium wilfordii HOM05D001521 ORTHO05D001342 1.8e-10 69.7 100 42.0
Hma1.2p1_0439F.1_g153130 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 2.3e-10 69.3 107 35.5
AUR62011460 Chenopodium quinoa HOM05D001521 ORTHO05D001342 3.0e-10 68.9 99 37.4
Lj1C599T0 Lonicera japonica HOM05D001521 ORTHO05D001342 3.0e-10 68.9 98 37.8
Rhsim05G0011300 Rhododendron simsii HOM05D001521 ORTHO05D001342 3.0e-10 68.9 128 36.7
MD03G1201400 Malus domestica HOM05D001521 ORTHO05D001342 5.2e-10 68.2 101 39.6
CSS0039569 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 6.8e-10 67.8 101 37.6
Lj6P274T9 Lonicera japonica HOM05D001521 ORTHO05D001342 6.8e-10 67.8 98 38.8
Lj9A162T18 Lonicera japonica HOM05D001521 ORTHO05D001342 8.8e-10 67.4 99 38.4
Cpa.g.sc1831.1 Carica papaya HOM05D001521 ORTHO05D001342 1.2e-09 67.0 98 35.7
Rhsim05G0011200 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.5e-09 66.6 105 41.0
Rhsim05G0010100 Rhododendron simsii HOM05D001521 ORTHO05D001342 2.6e-09 65.9 106 37.7
CSS0049728 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 3.4e-09 65.5 79 41.8
Rhsim05G0009900 Rhododendron simsii HOM05D001521 ORTHO05D001342 3.4e-09 65.5 105 36.2
Cpa.g.sc125.2 Carica papaya HOM05D001521 ORTHO05D001342 5.7e-09 64.7 98 35.7
AUR62011447 Chenopodium quinoa HOM05D001521 ORTHO05D001342 5.7e-09 64.7 103 35.9
CsaV3_6G006970 Cucumis sativus L. HOM05D001521 ORTHO05D001342 5.7e-09 64.7 99 35.4
Rhsim05G0011800 Rhododendron simsii HOM05D001521 ORTHO05D001342 5.7e-09 64.7 106 34.9
FvH4_7g07020 Fragaria vesca HOM05D001521 ORTHO05D001342 7.5e-09 64.3 101 38.6
FAN06G3326 Fragaria x ananassa HOM05D001521 ORTHO05D001342 7.5e-09 64.3 101 38.6
FAN10G4107 Fragaria x ananassa HOM05D001521 ORTHO05D001342 7.5e-09 64.3 101 38.6
Rhsim05G0011700 Rhododendron simsii HOM05D001521 ORTHO05D001342 7.5e-09 64.3 88 40.9
Sed0024723 Sechium edule HOM05D001521 ORTHO05D001342 7.5e-09 64.3 98 33.7
Hund15934 Selenicereus undatus HOM05D001521 ORTHO05D001342 7.5e-09 64.3 98 35.7
Sc19g0001570 Simmondsia chinensis HOM05D001521 ORTHO05D001342 7.5e-09 64.3 98 36.7
Ah.06g190240 Amaranthus hybridus HOM05D001521 ORTHO05D001342 9.8e-09 63.9 98 34.7
EL10As2g23150 Beta vulgaris HOM05D001521 ORTHO05D001342 9.8e-09 63.9 75 40.0
ClCG06G001060 Citrullus lanatus HOM05D001521 ORTHO05D001342 9.8e-09 63.9 99 33.3
Rhsim05G0010000 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.3e-08 63.5 90 37.8
Sed0017923 Sechium edule HOM05D001521 ORTHO05D001342 1.3e-08 63.5 98 33.7
Cpa.g.sc264.8 Carica papaya HOM05D001521 ORTHO05D001342 1.7e-08 63.2 98 34.7
MELO3C022429.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.7e-08 63.2 99 34.3
Cpa.g.c44888 Carica papaya HOM05D001521 ORTHO05D001342 2.2e-08 62.8 98 34.7
Cpa.g.sc291.2 Carica papaya HOM05D001521 ORTHO05D001342 2.2e-08 62.8 98 34.7
AUR62016615 Chenopodium quinoa HOM05D001521 ORTHO05D001342 2.2e-08 62.8 86 38.4
ClCG06G000920 Citrullus lanatus HOM05D001521 ORTHO05D001342 2.2e-08 62.8 100 40.0
MD02G1240200 Malus domestica HOM05D001521 ORTHO05D001342 2.2e-08 62.8 93 40.9
EL10Ac6g13883 Beta vulgaris HOM05D001521 ORTHO05D001342 2.8e-08 62.4 75 38.7
EL10Ac9g22298 Beta vulgaris HOM05D001521 ORTHO05D001342 2.8e-08 62.4 97 35.1
Lju124C11T1 Lonicera japonica HOM05D001521 ORTHO05D001342 2.8e-08 62.4 83 37.3
Rhsim05G0011600 Rhododendron simsii HOM05D001521 ORTHO05D001342 2.8e-08 62.4 110 34.5
AUR62011446 Chenopodium quinoa HOM05D001521 ORTHO05D001342 3.7e-08 62.0 86 38.4
MELO3C022431.2 Cucumis melo HOM05D001521 ORTHO05D001342 3.7e-08 62.0 99 33.3
CsaV3_6G006950 Cucumis sativus L. HOM05D001521 ORTHO05D001342 4.9e-08 61.6 86 41.9
CsaV3_6G006960 Cucumis sativus L. HOM05D001521 ORTHO05D001342 6.3e-08 61.2 99 33.3
FAN08G2871 Fragaria x ananassa HOM05D000011 ORTHO05D002639 8.3e-08 60.8 89 37.1
FvH4_5g03090 Fragaria vesca HOM05D001521 ORTHO05D001342 1.1e-07 60.5 105 37.1
FAN08G2396 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.1e-07 60.5 105 38.1
FAN09G2934 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.1e-07 60.5 48 64.6
FAN13G2871 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.1e-07 60.5 105 38.1
Prupe.2G097800 Prunus persica HOM05D001521 ORTHO05D001342 1.1e-07 60.5 102 34.3
Cpa.g.sc223.19 Carica papaya HOM05D001521 ORTHO05D001342 1.4e-07 60.1 84 32.1
MELO3C022430.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.4e-07 60.1 86 39.5
FAN13G2789 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.4e-07 60.1 102 37.3
FAN13G1377 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.8e-07 59.7 101 34.7
RcHm_v2.0_Chr1g0337031 Rosa chinensis HOM05D001521 ORTHO05D001342 1.8e-07 59.7 109 36.7
ECA233G0126 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.4e-07 59.3 86 40.7
FAN08G1602 Fragaria x ananassa HOM05D000011 ORTHO05D002639 2.4e-07 59.3 89 37.1
FAN08G2489 Fragaria x ananassa HOM05D000011 ORTHO05D002639 2.4e-07 59.3 89 37.1
Lj4P372T19 Lonicera japonica HOM05D001521 ORTHO05D001342 2.4e-07 59.3 83 36.1
Lj4P373T17 Lonicera japonica HOM05D001521 ORTHO05D001342 3.1e-07 58.9 83 36.1
Prupe.2G097500 Prunus persica HOM05D001521 ORTHO05D001342 3.1e-07 58.9 108 35.2
Gorai.005G011900 Gossypium raimondii HOM05D001521 ORTHO05D001342 4.1e-07 58.5 98 36.7
Lj1P1067T12 Lonicera japonica HOM05D001521 ORTHO05D001342 4.1e-07 58.5 98 37.8
Rhsim05G0011500 Rhododendron simsii HOM05D001521 ORTHO05D001342 4.1e-07 58.5 91 41.8
CANSAT21G0839 Cannabis sativa HOM05D001521 ORTHO05D001342 5.4e-07 58.2 108 34.3
ClCG06G003010 Citrullus lanatus HOM05D001521 ORTHO05D001342 5.4e-07 58.2 97 30.9
CsaV3_6G006980 Cucumis sativus L. HOM05D001521 ORTHO05D001342 5.4e-07 58.2 99 37.4
Gohir.D02G009366 Gossypium hirsutum HOM05D001521 ORTHO05D001342 7.0e-07 57.8 98 35.7
Lj4P372T18 Lonicera japonica HOM05D001521 ORTHO05D001342 7.0e-07 57.8 85 35.3
Ah.13g067960 Amaranthus hybridus HOM05D001521 ORTHO05D001342 9.2e-07 57.4 103 30.1
EL10Ac1g00528 Beta vulgaris HOM05D001521 ORTHO05D001342 9.2e-07 57.4 79 43.0
Lj4P374T10 Lonicera japonica HOM05D001521 ORTHO05D001342 9.2e-07 57.4 83 36.1
Rhsim08G0035600 Rhododendron simsii HOM05D001521 ORTHO05D001342 9.2e-07 57.4 86 36.0
CsaV3_6G006990 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.6e-06 56.6 99 31.3
FvH4_5g17710 Fragaria vesca HOM05D001521 ORTHO05D001342 1.6e-06 56.6 102 35.3
FAN18G4180 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.6e-06 56.6 102 35.3
ClCG06G001050 Citrullus lanatus HOM05D001521 ORTHO05D001342 2.0e-06 56.2 86 38.4
PSO421G0572 Papaver somniferum HOM05D001521 ORTHO05D001342 2.0e-06 56.2 98 37.8
Aqoxy7G03595 Aquilegia oxysepala HOM05D001521 ORTHO05D001342 2.7e-06 55.8 115 34.8
EL10Ac8g19842 Beta vulgaris HOM05D001521 ORTHO05D001342 2.7e-06 55.8 50 56.0
Duzib177G0128 Durio zibethinus HOM05D001521 ORTHO05D001342 2.7e-06 55.8 110 36.4
Duzib177G0777 Durio zibethinus HOM05D001521 ORTHO05D001342 2.7e-06 55.8 110 36.4
Gohir.D02G009550 Gossypium hirsutum HOM05D001521 ORTHO05D001342 2.7e-06 55.8 98 35.7
Gohir.D02G009600 Gossypium hirsutum HOM05D001521 ORTHO05D001342 2.7e-06 55.8 98 35.7
Gorai.005G011400 Gossypium raimondii HOM05D001521 ORTHO05D001342 2.7e-06 55.8 98 35.7
Gorai.005G011800 Gossypium raimondii HOM05D001521 ORTHO05D001342 2.7e-06 55.8 98 35.7
Hma1.2p1_0189F.1_g082933 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 2.7e-06 55.8 90 34.4
Gohir.A02G009180 Gossypium hirsutum HOM05D001521 ORTHO05D001342 3.5e-06 55.5 98 34.7
Gohir.A02G016901 Gossypium hirsutum HOM05D001521 ORTHO05D001342 3.5e-06 55.5 105 35.2
RcHm_v2.0_Chr1g0336971 Rosa chinensis HOM05D001521 ORTHO05D001342 3.5e-06 55.5 78 41.0
Sed0028148 Sechium edule HOM05D001521 ORTHO05D001342 3.5e-06 55.5 98 30.6
Ah.15g098810 Amaranthus hybridus HOM05D001521 ORTHO05D001342 4.5e-06 55.1 51 45.1
Duzib177G0760 Durio zibethinus HOM05D001521 ORTHO05D001342 4.5e-06 55.1 110 35.5
FAN04G1773 Fragaria x ananassa HOM05D001521 ORTHO05D001342 4.5e-06 55.1 102 34.3
Prupe.5G237200 Prunus persica HOM05D001521 ORTHO05D001342 4.5e-06 55.1 99 30.3
Ah.06g190230 Amaranthus hybridus HOM05D001521 ORTHO05D001342 5.9e-06 54.7 98 32.7
Gohir.D02G009700 Gossypium hirsutum HOM05D001521 ORTHO05D001342 5.9e-06 54.7 106 36.8
Gorai.005G012000 Gossypium raimondii HOM05D001521 ORTHO05D001342 5.9e-06 54.7 106 36.8
ECA232G3207 Erigeron canadensis HOM05D001521 ORTHO05D001342 7.7e-06 54.3 72 44.4
Gohir.A02G009500 Gossypium hirsutum HOM05D001521 ORTHO05D001342 7.7e-06 54.3 106 36.8
Gorai.005G023100 Gossypium raimondii HOM05D001521 ORTHO05D001342 7.7e-06 54.3 105 34.3


User provided reference genes

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