Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5304 Fragaria x ananassa HOM05D004253 ORTHO05D005013 4.9e-263 910.6 467 100.0
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 2.5e-251 871.7 510 90.0
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.5e-246 855.1 510 87.8
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.7e-245 851.7 510 87.6
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 7.9e-245 850.1 510 87.6
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 7.7e-232 807.0 511 84.1
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 6.8e-204 714.1 511 74.4
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 1.1e-201 706.8 463 80.6
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 2.8e-189 665.6 510 69.2
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 1.5e-187 659.8 508 69.1
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 1.1e-174 617.1 415 79.3
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 2.1e-173 612.8 504 64.9
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 1.6e-168 596.7 489 63.6
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 3.5e-168 595.5 489 63.4
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 1.3e-167 593.6 500 63.0
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 1.7e-167 593.2 489 63.2
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 3.9e-167 592.0 497 63.8
Haze_21100 Corylus avellana HOM05D004253 ORTHO05D005013 1.5e-166 590.1 495 62.6
Sabra16G0129900 Salix brachista HOM05D004253 ORTHO05D005013 1.5e-166 590.1 500 62.6
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 7.3e-166 587.8 476 64.9
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 5.3e-164 581.6 504 60.7
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 9.0e-164 580.9 497 63.0
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 9.0e-164 580.9 494 63.4
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 3.4e-163 578.9 476 62.8
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 4.4e-163 578.6 476 63.2
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 7.6e-163 577.8 485 61.2
Cfa017100 Carpinus fangiana HOM05D004253 ORTHO05D005013 7.6e-163 577.8 495 61.6
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 9.9e-163 577.4 475 63.4
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 3.8e-162 575.5 474 63.3
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 1.1e-161 573.9 474 63.9
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 4.2e-161 572.0 476 63.0
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 2.7e-160 569.3 502 60.8
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 7.8e-160 567.8 491 60.9
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 1.0e-159 567.4 488 61.7
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 5.1e-159 565.1 482 61.4
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 6.6e-159 564.7 482 61.6
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 1.1e-158 563.9 558 55.7
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 1.5e-158 563.5 492 60.8
Duzib177G0173 Durio zibethinus HOM05D004253 ORTHO05D005013 9.6e-158 560.8 484 61.0
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 9.6e-158 560.8 483 60.5
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 9.6e-158 560.8 497 60.6
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 2.1e-157 559.7 482 61.4
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 1.4e-156 557.0 475 61.5
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 3.1e-156 555.8 480 60.4
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 3.1e-156 555.8 474 60.3
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 5.3e-156 555.1 477 60.6
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 2.9e-154 549.3 501 59.3
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 3.2e-153 545.8 487 60.2
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 3.2e-153 545.8 510 59.2
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 5.4e-153 545.0 483 59.0
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 5.4e-153 545.0 475 60.6
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 9.3e-153 544.3 495 58.2
Lj3g0025170 Lotus japonicus HOM05D004253 ORTHO05D005013 1.6e-152 543.5 487 58.3
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 2.1e-152 543.1 482 58.9
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 3.5e-152 542.3 475 60.2
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 1.3e-151 540.4 491 57.6
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 1.8e-151 540.0 483 58.6
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 6.7e-151 538.1 483 58.8
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 1.9e-150 536.6 499 56.9
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 2.5e-150 536.2 492 57.3
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 3.3e-150 535.8 482 58.5
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 5.6e-150 535.0 501 58.3
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 9.6e-150 534.3 498 57.0
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 1.6e-149 533.5 483 58.8
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 2.1e-149 533.1 509 57.2
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea HOM05D004253 ORTHO05D005013 2.8e-149 532.7 525 55.2
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 3.7e-149 532.3 507 56.6
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 3.7e-149 532.3 502 56.4
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 6.2e-149 531.6 509 56.6
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 1.4e-148 530.4 484 58.9
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 4.0e-148 528.9 474 58.6
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 9.0e-148 527.7 486 58.2
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 9.0e-148 527.7 509 54.6
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.2e-147 527.3 510 55.7
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 1.2e-147 527.3 489 57.5
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 2.6e-147 526.2 482 59.3
Manes.09G113000 Manihot esculenta HOM05D004253 ORTHO05D005013 3.4e-147 525.8 454 62.1
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 7.6e-147 524.6 489 59.1
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 1.0e-146 524.2 528 54.5
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 1.0e-146 524.2 511 54.6
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.7e-146 523.5 509 55.6
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 2.2e-146 523.1 483 58.0
TWI74G0689 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 3.8e-146 522.3 451 63.2
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 4.9e-146 521.9 507 56.2
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 8.4e-146 521.2 464 58.8
Duzib093G0769 Durio zibethinus HOM05D004253 ORTHO05D005013 1.1e-145 520.8 448 61.6
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 2.1e-144 516.5 485 55.5
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 4.6e-144 515.4 475 55.8
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 4.6e-144 515.4 487 58.3
AUR62026347 Chenopodium quinoa HOM05D004253 ORTHO05D005013 5.1e-143 511.9 489 56.2
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 1.5e-142 510.4 516 57.0
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 2.5e-142 509.6 509 53.4
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 4.3e-142 508.8 511 53.0
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 5.7e-142 508.4 476 56.3
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 9.6e-142 507.7 509 53.2
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 1.6e-141 506.9 481 55.5
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 3.7e-141 505.8 509 52.8
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 3.7e-141 505.8 492 54.7
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.4e-140 503.8 476 55.0
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 1.8e-140 503.4 459 57.3
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 5.3e-140 501.9 460 59.8
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 9.0e-140 501.1 486 54.7
Glyma.01G128300 Glycine max HOM05D004253 ORTHO05D005013 9.0e-140 501.1 462 57.1
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 4.5e-139 498.8 438 59.8
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 5.0e-138 495.4 477 54.3
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 1.2e-136 490.7 509 52.5
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 2.1e-136 490.0 462 55.2
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 4.6e-136 488.8 480 55.8
Lj3C944T3 Lonicera japonica HOM05D004253 ORTHO05D005013 2.3e-135 486.5 399 65.4
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 2.3e-135 486.5 526 52.1
Medtr4g013245 Medicago truncatula HOM05D004253 ORTHO05D005013 1.9e-134 483.4 490 54.5
TPR.G5208 Trifolium pratense HOM05D004253 ORTHO05D005013 7.4e-134 481.5 457 58.4
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 6.3e-133 478.4 493 52.5
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 3.1e-132 476.1 471 53.9
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 6.9e-132 474.9 443 57.1
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea HOM05D004253 ORTHO05D005013 4.5e-131 472.2 435 57.9
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 2.2e-130 469.9 463 55.3
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 2.9e-130 469.5 431 59.4
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 3.8e-130 469.2 406 62.8
CDE04G3038 Ceratophyllum demersum HOM05D004253 ORTHO05D005013 4.2e-129 465.7 455 55.6
AUR62006302 Chenopodium quinoa HOM05D004253 ORTHO05D005013 8.8e-127 458.0 441 56.7
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 2.8e-125 453.0 409 59.9
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 1.1e-124 451.1 450 53.3
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 2.5e-121 439.9 479 50.7
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 4.2e-121 439.1 444 54.5
Eucgr.A00630 Eucalyptus grandis HOM05D004253 ORTHO05D005013 4.7e-120 435.6 438 54.1
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 6.7e-119 431.8 392 59.7
Ca_27544_v3 Cicer arietinum L. HOM05D004253 ORTHO05D005013 3.7e-117 426.0 418 56.9
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 5.5e-113 412.1 426 53.8
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.0e-111 407.9 446 49.1
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 4.8e-109 399.1 429 52.7
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 4.1e-108 396.0 430 50.7
Dinv25280 Davidia involucrata HOM05D004253 ORTHO05D005013 2.1e-104 383.6 339 61.1
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 9.8e-102 374.8 444 50.2
SalBow5G5570 Salvia bowleyana HOM05D004253 ORTHO05D005013 1.7e-101 374.0 381 54.3
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 1.2e-99 367.9 510 43.3
Potri.016G128500 Populus trichocarpa HOM05D004253 ORTHO05D005013 9.4e-97 358.2 332 59.0
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 3.7e-93 346.3 489 40.7
BolC4t22497H Brassica oleracea HOM05D004253 ORTHO05D005013 1.7e-90 337.4 381 49.6
C04p09080 Brassica napus HOM05D004253 ORTHO05D005013 4.2e-89 332.8 329 53.2
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 3.0e-87 326.6 460 42.2
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 3.9e-82 309.7 489 39.9
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 8.9e-79 298.5 328 50.6
Lsat_1_v5_gn_9_37021 Lactuca sativa HOM05D004253 ORTHO05D005013 7.5e-78 295.4 327 52.0
EL10Ac7g16784 Beta vulgaris HOM05D004253 ORTHO05D005013 8.3e-77 292.0 346 48.8
EL10As8g23831 Beta vulgaris HOM05D004253 ORTHO05D005013 8.3e-77 292.0 346 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 7.8e-75 285.4 458 38.9
HanXRQChr10g0287841 Helianthus annuus HOM05D004253 ORTHO05D005013 9.2e-68 261.9 300 49.3
Cpa.g.sc5.254 Carica papaya HOM05D004253 ORTHO05D005013 3.9e-66 256.5 448 38.2
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 6.2e-56 222.6 482 32.2
HanXRQChr10g0287851 Helianthus annuus HOM05D004253 ORTHO05D005013 4.9e-53 213.0 162 64.2
C07p40260 Brassica napus HOM05D004253 ORTHO05D005013 4.3e-49 199.9 139 66.2
BolC7t44561H Brassica oleracea HOM05D004253 ORTHO05D005013 4.0e-47 193.4 147 63.3
SEGI_11914 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 1.6e-43 181.4 148 60.1
RcHm_v2.0_Chr3g0461431 Rosa chinensis HOM05D004253 ORTHO05D005013 2.1e-43 181.0 101 86.1
BcaNung02099 Brassica carinata HOM05D004253 ORTHO05D005013 3.0e-42 177.2 127 65.4
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 5.8e-38 162.9 205 43.9
MSTRG.18966 Avicennia marina HOM05D004253 ORTHO05D005013 8.7e-34 149.1 223 41.3
Glyma.03G042500 Glycine max HOM05D004253 ORTHO05D005013 7.4e-33 146.0 117 63.2
Cfa024502 Carpinus fangiana HOM05D004253 ORTHO05D005013 4.5e-22 110.2 508 23.8
CBR_g42060 Chara braunii HOM05D004253 ORTHO05D005013 7.2e-20 102.8 97 49.5
TPR.G5249 Trifolium pratense HOM05D004253 ORTHO05D005013 1.8e-18 98.2 65 69.2
AagrBONN_evm.TU.Sc2ySwM_368.2655 Anthoceros agrestis HOM05D006337 ORTHO05D008050 2.1e-11 74.7 473 23.0
PSO266G0027 Papaver somniferum HOM05D004253 ORTHO05D005013 6.7e-10 69.7 44 79.5
SMO118G0422 Selaginella moellendorffii HOM05D006337 ORTHO05D008050 8.8e-10 69.3 448 23.4
THA.LOC104802775 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 3.3e-09 67.4 462 22.9
A02p39000 Brassica napus HOM05D006337 ORTHO05D008050 1.7e-08 65.1 441 21.8
BcaNung06218 Brassica carinata HOM05D006337 ORTHO05D008050 2.2e-08 64.7 441 22.4
Mapoly0001s0146 Marchantia polymorpha HOM05D006337 ORTHO05D008050 2.2e-08 64.7 458 24.5
BolC2t11920H Brassica oleracea HOM05D006337 ORTHO05D008050 2.8e-08 64.3 441 21.5
Cre16.g687000 Chlamydomonas reinhardtii HOM05D004253 ORTHO05D005013 3.7e-08 63.9 201 27.9
HPP92_010606 Vanilla planifolia HOM05D006337 ORTHO05D008050 4.8e-08 63.5 440 21.6
Sp2g21170 Schrenkiella parvula HOM05D006337 ORTHO05D008050 6.3e-08 63.2 443 21.7
BcaC03g17830 Brassica carinata HOM05D006337 ORTHO05D008050 1.1e-07 62.4 441 21.3
C02p58590 Brassica napus HOM05D006337 ORTHO05D008050 1.1e-07 62.4 441 21.5
BraA02t08870Z Brassica rapa HOM05D006337 ORTHO05D008050 1.1e-07 62.4 441 21.5
Thhalv10003867m.g Eutrema salsugineum HOM05D006337 ORTHO05D008050 1.1e-07 62.4 461 22.1
CAN.G1076.22 Capsicum annuum HOM05D006337 ORTHO05D008050 3.1e-07 60.8 438 23.7
SalBow3G0030 Salvia bowleyana HOM05D006337 ORTHO05D008050 6.9e-07 59.7 467 24.4
CARHR186710 Cardamine hirsuta HOM05D006337 ORTHO05D008050 1.5e-06 58.5 473 22.2
Nitab4.5_0001338g0110 Nicotiana tabacum HOM05D006337 ORTHO05D008050 2.0e-06 58.2 434 24.4
Sc09g0002620 Simmondsia chinensis HOM05D006337 ORTHO05D008050 2.6e-06 57.8 441 23.8
THA.LOC104821740 Tarenaya hassleriana HOM05D006337 ORTHO05D008050 3.4e-06 57.4 473 21.6
Cc02_g35170 Coffea canephora HOM05D006337 ORTHO05D008050 4.5e-06 57.0 436 23.4
Hma1.2p1_0008F-1.1_g005550 Hydrangea macrophylla HOM05D006337 ORTHO05D008050 4.5e-06 57.0 455 21.8
Carub.0006s2448 Capsella rubella HOM05D006337 ORTHO05D008050 5.9e-06 56.6 445 21.8
Oeu052934.2 Olea europaea HOM05D006337 ORTHO05D008050 5.9e-06 56.6 423 22.2


User provided reference genes

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