Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.7e-62 241.9 127 100.0
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.7e-62 241.9 127 100.0
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-61 240.0 127 98.4
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-61 240.0 127 99.2
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-61 240.0 127 99.2
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.9e-61 238.0 127 97.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.6e-61 236.9 127 96.9
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 4.3e-60 234.6 127 96.9
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 91.3
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 91.3
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 4.4e-57 224.6 127 92.1
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 3.8e-56 221.5 128 93.0
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 3.8e-56 221.5 128 92.2
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 4.9e-56 221.1 127 90.6
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 91.3
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 90.6
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 1.9e-55 219.2 128 90.6
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.9e-55 219.2 127 90.6
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 89.0
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 4.1e-55 218.0 127 88.2
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.1e-55 218.0 127 89.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 87.4
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 87.4
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 87.4
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 87.4
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 86.6
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.7e-54 215.3 128 90.6
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 86.6
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 87.4
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 87.4
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 6.0e-54 214.2 128 89.8
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 7.8e-54 213.8 127 87.4
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 85.8
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.0e-53 213.4 126 85.7
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 86.6
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 85.0
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 2.3e-53 212.2 125 87.2
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.3e-53 212.2 126 88.1
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 3.9e-53 211.5 124 87.1
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 3.9e-53 211.5 123 90.2
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.8
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 85.0
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.6e-53 210.7 129 86.0
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 8.7e-53 210.3 127 86.6
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.1e-52 209.9 123 89.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.0
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 83.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 84.3
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 5.6e-52 207.6 125 85.6
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 5.6e-52 207.6 129 82.9
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 83.5
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 85.0
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 82.7
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 84.3
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 83.5
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.2e-51 204.1 126 81.7
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.2e-51 204.1 127 82.7
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 8.1e-51 203.8 124 84.7
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 83.5
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 81.1
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.4e-50 202.2 126 83.3
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 79.5
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 4.0e-50 201.4 129 82.2
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 5.2e-50 201.1 127 79.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 5.2e-50 201.1 129 79.8
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 6.9e-50 200.7 126 79.4
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 6.9e-50 200.7 126 81.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.9e-50 200.7 129 82.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 81.4
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 126 80.2
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.0e-49 199.1 128 81.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 3.4e-49 198.4 126 81.0
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 3.4e-49 198.4 129 79.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 5.8e-49 197.6 124 79.8
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 5.8e-49 197.6 126 79.4
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.3e-48 196.4 129 79.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.7e-48 196.1 122 83.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 2.9e-48 195.3 127 79.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 79.5
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 6.4e-48 194.1 124 79.8
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 8.4e-48 193.7 127 78.7
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 8.4e-48 193.7 127 74.8
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 4.2e-47 191.4 126 78.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 5.4e-47 191.0 130 78.5
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 5.4e-47 191.0 131 78.6
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 7.1e-47 190.7 122 81.1
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.2e-46 189.9 125 79.2
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 75.6
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.6e-46 189.5 122 78.7
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.6e-46 189.5 131 75.6
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.1e-46 189.1 122 78.7
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 2.1e-46 189.1 127 74.8
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-46 188.7 130 76.9
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.7e-46 188.7 125 77.6
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 4.6e-46 188.0 127 74.8
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 7.8e-46 187.2 131 74.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 2.3e-45 185.7 131 75.6
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 6.6e-45 184.1 118 79.7
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 6.6e-45 184.1 118 79.7
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 8.7e-45 183.7 127 74.0
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.5e-44 183.0 118 78.8
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 130 73.8
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.6e-43 179.5 130 73.1
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.6e-43 179.5 127 74.0
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 2.1e-43 179.1 127 73.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.8e-42 176.0 127 72.4
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 2.4e-42 175.6 127 73.2
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 6.9e-42 174.1 147 64.6
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.5e-41 172.9 129 72.9
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 1.7e-40 169.5 129 72.1
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 1.7e-40 169.5 129 72.1
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 2.9e-40 168.7 127 67.7
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 7.1e-39 164.1 127 66.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 6.7e-37 157.5 154 59.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 2.5e-36 155.6 127 66.1
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 62.2
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 2.1e-35 152.5 127 62.2
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 3.1e-34 148.7 90 82.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.5e-33 144.8 127 59.8
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.2e-30 136.7 88 83.0
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 3.9e-29 131.7 87 80.5
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.9e-28 129.4 133 54.9
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 4.3e-28 128.3 87 75.9
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 9.0e-26 120.6 87 71.3
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 7.4e-20 100.9 120 43.3
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 7.6e-17 90.9 121 42.1
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.0e-16 90.5 61 77.0
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.9e-16 89.0 121 43.8
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.0e-13 80.5 46 89.1
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 5.1e-13 78.2 40 90.0
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 5.7e-12 74.7 40 90.0
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.8e-10 69.7 50 76.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-08 63.2 31 90.3
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.4e-07 60.1 41 68.3


User provided reference genes

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