Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5162 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-58 228.8 115 100.0
FvH4_6g33940 Fragaria vesca HOM05D002400 ORTHO05D002568 3.1e-57 224.9 112 100.0
FAN02G3125 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-35 151.8 92 84.8
FvH4_6g19090 Fragaria vesca HOM05D002400 ORTHO05D002568 2.1e-34 149.1 115 68.7
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-34 148.3 117 66.7
FAN14G5794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.1e-34 147.1 115 67.8
RcHm_v2.0_Chr3g0474131 Rosa chinensis HOM05D002400 ORTHO05D002568 1.8e-28 129.4 120 60.8
FAN14G1580 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.1e-25 118.2 74 81.1
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.4e-24 115.2 86 67.4
Prupe.7G104900 Prunus persica HOM05D002400 ORTHO05D002568 4.3e-19 98.2 121 47.9
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 5.7e-19 97.8 120 49.2
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-18 95.1 120 48.3
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 4.8e-18 94.7 113 45.1
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 8.2e-18 94.0 120 48.3
MD14G1024900 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-17 93.6 126 46.0
RcHm_v2.0_Chr3g0474191 Rosa chinensis HOM05D002400 ORTHO05D002568 1.1e-17 93.6 114 44.7
Prupe.7G106300 Prunus persica HOM05D002400 ORTHO05D002568 1.4e-17 93.2 117 47.9
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 2.4e-17 92.4 93 51.6
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 2.4e-17 92.4 113 45.1
FAN09G2919 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.1e-17 91.7 99 50.5
MD14G1026000 Malus domestica HOM05D002400 ORTHO05D002568 4.1e-17 91.7 96 52.1
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.9e-17 90.9 120 46.7
RcHm_v2.0_Chr3g0474171 Rosa chinensis HOM05D002400 ORTHO05D002568 1.2e-16 90.1 117 45.3
FAN02G1484 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.0e-16 89.4 105 45.7
FvH4_6g33902 Fragaria vesca HOM05D002400 ORTHO05D002568 2.6e-16 89.0 93 51.6
FAN14G2111 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.6e-16 89.0 93 51.6
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 2.6e-16 89.0 120 45.8
RcHm_v2.0_Chr3g0474151 Rosa chinensis HOM05D002400 ORTHO05D002568 2.6e-16 89.0 97 49.5
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 3.4e-16 88.6 99 47.5
Prupe.7G108600 Prunus persica HOM05D002400 ORTHO05D002568 3.4e-16 88.6 117 44.4
RcHm_v2.0_Chr3g0474041 Rosa chinensis HOM05D002400 ORTHO05D002568 3.4e-16 88.6 119 45.4
FAN14G5626 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.5e-16 88.2 113 44.2
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 5.9e-16 87.8 99 48.5
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 5.9e-16 87.8 121 43.0
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 5.9e-16 87.8 120 45.8
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 2.2e-15 85.9 121 41.3
FvH4_6g19010 Fragaria vesca HOM05D002400 ORTHO05D002568 2.9e-15 85.5 119 46.2
FAN05G4425 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-15 85.5 116 44.8
MD14G1025200 Malus domestica HOM05D002400 ORTHO05D002568 2.9e-15 85.5 99 47.5
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-15 85.5 119 42.9
Prupe.7G105700 Prunus persica HOM05D002400 ORTHO05D002568 3.8e-15 85.1 117 45.3
FAN09G2665 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.5e-15 84.3 119 44.5
MD14G1024100 Malus domestica HOM05D002400 ORTHO05D002568 6.5e-15 84.3 117 44.4
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.5e-15 84.0 100 47.0
FAN19G0785 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-14 83.2 112 42.0
FAN26G2620 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.4e-14 83.2 112 42.0
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-14 83.2 118 44.1
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 9.4e-14 80.5 110 43.6
MD12G1026400 Malus domestica HOM05D002400 ORTHO05D002568 1.6e-13 79.7 102 46.1
MD12G1026700 Malus domestica HOM05D002400 ORTHO05D002568 1.6e-13 79.7 102 46.1
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-13 79.3 93 47.3
FAN14G4517 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.7e-13 79.0 93 46.2
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 3.6e-13 78.6 93 47.3
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-13 78.6 93 46.2
FAN14G2794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.6e-13 78.2 93 47.3
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.6e-13 78.2 93 47.3
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 4.6e-13 78.2 93 46.2
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 4.6e-13 78.2 98 44.9
FAN02G1086 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-13 77.8 93 45.2
MD14G1025000 Malus domestica HOM05D002400 ORTHO05D002568 6.1e-13 77.8 135 37.0
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 6.1e-13 77.8 112 40.2
Prupe.7G108700 Prunus persica HOM05D002400 ORTHO05D002568 7.9e-13 77.4 119 42.9
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-12 76.6 121 42.1
MD12G1201900 Malus domestica HOM05D002400 ORTHO05D002568 3.0e-12 75.5 93 44.1
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 3.0e-12 75.5 110 40.0
RcHm_v2.0_Chr3g0474091 Rosa chinensis HOM05D002400 ORTHO05D002568 3.0e-12 75.5 92 47.8
MD12G1217800 Malus domestica HOM05D002400 ORTHO05D002568 3.9e-12 75.1 87 47.1
Prupe.5G196300 Prunus persica HOM05D002400 ORTHO05D002568 3.9e-12 75.1 87 48.3
MD04G1145300 Malus domestica HOM05D002400 ORTHO05D002568 5.1e-12 74.7 114 43.9
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 1.5e-11 73.2 119 43.7
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.5e-11 73.2 98 46.9
MD14G1025800 Malus domestica HOM05D002400 ORTHO05D002568 2.5e-11 72.4 113 38.9
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-11 72.0 105 41.9
MD12G1217700 Malus domestica HOM05D002400 ORTHO05D002568 3.3e-11 72.0 91 45.1
FAN19G0352 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.3e-11 71.6 99 42.4
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 4.3e-11 71.6 111 45.9
RcHm_v2.0_Chr2g0157031 Rosa chinensis HOM05D002400 ORTHO05D002568 4.3e-11 71.6 119 43.7
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.7e-11 71.2 94 44.7
FvH4_5g32301 Fragaria vesca HOM05D002400 ORTHO05D002568 7.4e-11 70.9 111 40.5
FvH4_6g19020 Fragaria vesca HOM05D002400 ORTHO05D002568 7.4e-11 70.9 96 42.7
RcHm_v2.0_Chr3g0473951 Rosa chinensis HOM05D002400 ORTHO05D002568 7.4e-11 70.9 93 43.0
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 9.7e-11 70.5 96 41.7
FAN09G1471 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-10 70.1 96 41.7
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 1.3e-10 70.1 115 40.0
RcHm_v2.0_Chr3g0473961 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-10 70.1 94 40.4
FvH4_6g18911 Fragaria vesca HOM05D002400 ORTHO05D002568 2.2e-10 69.3 98 40.8
FAN05G2917 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-10 69.3 97 40.2
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 2.8e-10 68.9 86 46.5
RcHm_v2.0_Chr7g0205891 Rosa chinensis HOM05D002400 ORTHO05D002568 2.8e-10 68.9 117 38.5
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-10 68.6 86 45.3
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-10 68.6 93 39.8
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-10 68.6 86 45.3
RcHm_v2.0_Chr7g0217281 Rosa chinensis HOM05D002400 ORTHO05D002568 3.7e-10 68.6 110 35.5
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.8e-10 68.2 86 45.3
Prupe.6G311500 Prunus persica HOM05D002400 ORTHO05D002568 1.8e-09 66.2 119 38.7
FAN06G0647 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-09 65.5 87 47.1
RcHm_v2.0_Chr7g0205901 Rosa chinensis HOM05D002400 ORTHO05D002568 3.1e-09 65.5 117 36.8
FAN02G2106 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.1e-09 65.1 86 45.3
RcHm_v2.0_Chr7g0193261 Rosa chinensis HOM05D002400 ORTHO05D002568 6.9e-09 64.3 118 39.8
vmacro12123 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 9.1e-09 63.9 114 37.7
FvH4_5g20530 Fragaria vesca HOM05D002400 ORTHO05D002568 1.5e-08 63.2 118 37.3
FvH4_6g18960 Fragaria vesca HOM05D001739 ORTHO05D035276 1.5e-08 63.2 107 37.4
FAN14G5714 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.0e-08 62.8 94 35.1
MD14G1157200 Malus domestica HOM05D002400 ORTHO05D002568 2.6e-08 62.4 116 40.5
RcHm_v2.0_Chr3g0458171 Rosa chinensis HOM05D002400 ORTHO05D002568 2.6e-08 62.4 108 35.2
MD12G1159100 Malus domestica HOM05D002400 ORTHO05D002568 3.4e-08 62.0 112 42.9
Prupe.7G105600 Prunus persica HOM05D002400 ORTHO05D002568 3.4e-08 62.0 69 47.8
RcHm_v2.0_Chr7g0205961 Rosa chinensis HOM05D002400 ORTHO05D002568 4.5e-08 61.6 117 35.9
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 7.7e-08 60.8 118 36.4
FAN02G0058 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-07 60.5 96 38.5
FAN14G3084 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-07 60.5 68 48.5
FAN18G0377 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-07 60.5 117 35.0
FvH4_5g26410 Fragaria vesca HOM05D002400 ORTHO05D002568 1.7e-07 59.7 110 35.5
FAN18G0968 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-07 59.7 72 47.2
RcHm_v2.0_Chr7g0205931 Rosa chinensis HOM05D002400 ORTHO05D002568 1.7e-07 59.7 117 34.2
FAN18G4571 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-07 59.3 118 35.6
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 2.2e-07 59.3 76 44.7
FvH4_7g04740 Fragaria vesca HOM05D002400 ORTHO05D002568 2.9e-07 58.9 95 42.1
FAN06G1151 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-07 58.9 85 41.2
FAN06G1414 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-07 58.9 95 42.1
FAN06G4070 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-07 58.9 95 42.1
FAN13G3133 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-07 58.9 120 35.8
FvH4_5g20621 Fragaria vesca HOM05D002400 ORTHO05D002568 3.8e-07 58.5 117 35.0
FAN08G1320 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.8e-07 58.5 118 37.3
FAN08G1360 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.8e-07 58.5 117 35.0
MD05G1234100 Malus domestica HOM05D002400 ORTHO05D002568 5.0e-07 58.2 85 40.0
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.5e-07 57.8 109 31.2
FAN18G2424 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.5e-07 57.4 120 36.7
Prupe.7G107300 Prunus persica HOM05D002400 ORTHO05D002568 8.5e-07 57.4 98 39.8
FAN05G1596 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-06 57.0 109 30.3
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-06 57.0 109 30.3
MD04G1145600 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-06 56.6 111 39.6
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.4e-06 56.6 119 34.5
Aqoxy3G02193 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.2e-06 55.5 98 34.7
FvH4_5g20611 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-06 55.1 117 34.2
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-06 55.1 106 31.1
FvH4_6g18920 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-06 55.1 116 34.5
FvH4_6g18953 Fragaria vesca HOM05D002400 ORTHO05D002568 4.2e-06 55.1 110 35.5
FAN05G4159 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.2e-06 55.1 116 34.5
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 4.2e-06 55.1 93 39.8
Cfa005419 Carpinus fangiana HOM05D002400 ORTHO05D002568 5.5e-06 54.7 80 42.5
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 5.5e-06 54.7 80 42.5
MD04G1058800 Malus domestica HOM05D002400 ORTHO05D002568 5.5e-06 54.7 71 42.3
FvH4_5g26400 Fragaria vesca HOM05D002400 ORTHO05D002568 9.4e-06 53.9 107 37.4


User provided reference genes

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