Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5125 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.5e-138 496.1 240 100.0
FvH4_6g48151 Fragaria vesca HOM05D000576 ORTHO05D000368 2.5e-69 266.2 276 57.2
FAN09G3608 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.0e-67 258.8 251 60.2
FAN02G4373 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.3e-65 253.8 193 68.4
RcHm_v2.0_Chr2g0167551 Rosa chinensis HOM05D000576 ORTHO05D000368 2.5e-61 239.6 285 53.0
FAN05G2407 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.2e-60 237.3 283 51.2
FAN14G3739 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.4e-59 233.0 284 51.4
FvH4_6g47821 Fragaria vesca HOM05D000576 ORTHO05D000368 6.9e-59 231.5 284 50.7
FAN05G4147 Fragaria x ananassa HOM05D008847 ORTHO05D000368 5.8e-50 201.8 227 56.4
FAN14G2737 Fragaria x ananassa HOM05D000385 ORTHO05D000269 2.2e-49 199.9 203 55.7
RcHm_v2.0_Chr2g0167641 Rosa chinensis HOM05D000576 ORTHO05D000368 4.5e-42 175.6 279 40.9
RcHm_v2.0_Chr2g0168251 Rosa chinensis HOM05D000576 ORTHO05D000368 1.7e-41 173.7 276 42.0
FvH4_6g48814 Fragaria vesca HOM05D001255 ORTHO05D025495 3.8e-41 172.6 171 56.1
FAN09G2824 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.8e-41 172.6 94 90.4
RcHm_v2.0_Chr2g0167601 Rosa chinensis HOM05D000576 ORTHO05D000368 4.3e-37 159.1 260 45.4
FAN14G2376 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.2e-36 155.2 256 41.4
RcHm_v2.0_Chr2g0166621 Rosa chinensis HOM05D000576 ORTHO05D000368 3.3e-29 132.9 273 37.4
RcHm_v2.0_Chr3g0476161 Rosa chinensis HOM05D000576 ORTHO05D000368 4.3e-29 132.5 269 38.7
Prupe.3G259800 Prunus persica HOM05D000576 ORTHO05D000368 1.1e-27 127.9 269 37.9
FAN09G4808 Fragaria x ananassa HOM05D008847 ORTHO05D000368 2.2e-25 120.2 96 64.6
RcHm_v2.0_Chr5g0047501 Rosa chinensis HOM05D008847 ORTHO05D000368 3.2e-24 116.3 144 47.9
RcHm_v2.0_Chr2g0167561 Rosa chinensis HOM05D000576 ORTHO05D000368 3.7e-20 102.8 131 47.3
FvH4_6g48431 Fragaria vesca HOM05D008847 ORTHO05D000368 1.1e-19 101.3 193 39.4
FAN06G0982 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.1e-19 99.8 281 32.7
MD09G1063900 Malus domestica HOM05D000576 ORTHO05D000368 5.3e-19 99.0 272 32.4
RcHm_v2.0_Chr3g0476181 Rosa chinensis HOM05D000576 ORTHO05D000368 2.0e-18 97.1 225 36.4
FAN10G0882 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.0e-17 94.7 260 32.7
TAR629G2683 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.2e-17 93.6 258 31.8
FAN06G2289 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.8e-17 92.8 260 32.7
TAR496G0003 Trochodendron aralioides HOM05D000576 ORTHO05D000368 3.8e-17 92.8 258 31.8
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.5e-16 90.1 122 48.4
Prupe.3G259300 Prunus persica HOM05D008847 ORTHO05D000368 9.4e-16 88.2 230 34.8
FAN06G5009 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.1e-15 87.0 236 36.0
FvH4_7g27481 Fragaria vesca HOM05D008847 ORTHO05D000368 3.6e-15 86.3 214 37.4
FAN06G1177 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.6e-15 86.3 230 35.7
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 7.9e-15 85.1 189 40.2
RcHm_v2.0_Chr5g0008761 Rosa chinensis HOM05D008847 ORTHO05D045484 7.9e-15 85.1 247 33.2
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.0e-14 84.7 265 35.8
Sabra17G0081300 Salix brachista HOM05D000576 ORTHO05D000368 1.4e-14 84.3 116 44.0
FAN14G0812 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.8e-14 84.0 264 34.8
FvH4_6g48320 Fragaria vesca HOM05D000576 ORTHO05D000368 5.1e-14 82.4 61 72.1
FvH4_6g44020 Fragaria vesca HOM05D008847 ORTHO05D000368 1.5e-13 80.9 278 31.7
Aqoxy5G04185 Aquilegia oxysepala HOM05D000015 ORTHO05D002445 2.0e-13 80.5 130 39.2
FAN05G3797 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.0e-13 80.5 263 35.4
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.6e-13 80.1 193 30.6
FAN06G2118 Fragaria x ananassa HOM05D008847 ORTHO05D016304 3.3e-13 79.7 136 41.9
FvH4_6g47970 Fragaria vesca HOM05D000576 ORTHO05D000368 7.4e-13 78.6 116 47.4
FvH4_7g25361 Fragaria vesca HOM05D008847 ORTHO05D000368 7.4e-13 78.6 136 41.9
FAN14G0346 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.4e-13 78.6 116 47.4
FvH4_6g44041 Fragaria vesca HOM05D008847 ORTHO05D000368 9.7e-13 78.2 167 37.1
FAN05G2544 Fragaria x ananassa HOM05D008847 ORTHO05D016304 9.7e-13 78.2 254 32.7
FAN14G4050 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.7e-12 77.4 255 31.8
FvH4_6g50840 Fragaria vesca HOM05D000576 ORTHO05D000368 3.7e-12 76.3 241 34.9
CSS0031751 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 1.1e-11 74.7 122 37.7
FAN03G1143 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.4e-11 74.3 110 45.5
FAN01G2751 Fragaria x ananassa HOM05D008847 ORTHO05D000368 2.4e-11 73.6 114 43.9
TAR633G1517 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.4e-11 73.6 130 34.6
Cc03_g13650 Coffea canephora HOM05D000576 ORTHO05D000368 3.1e-11 73.2 248 28.2
Rhsim02G0214100 Rhododendron simsii HOM05D000576 ORTHO05D000368 5.3e-11 72.4 116 37.1
Rhsim12G0068900 Rhododendron simsii HOM05D000312 ORTHO05D000221 6.9e-11 72.0 134 37.3
CSS0001211 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 9.1e-11 71.6 262 27.9
Dinv11451 Davidia involucrata HOM05D000576 ORTHO05D000368 9.1e-11 71.6 258 29.5
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.5e-10 70.9 242 29.8
FAN03G0347 Fragaria x ananassa HOM05D008847 ORTHO05D000368 5.9e-10 68.9 119 43.7
FAN06G2140 Fragaria x ananassa HOM05D008847 ORTHO05D000368 5.9e-10 68.9 119 43.7
TPR.G7001 Trifolium pratense HOM05D009500 ORTHO05D000368 5.9e-10 68.9 288 27.8
Prupe.7G249000 Prunus persica HOM05D000576 ORTHO05D000368 7.7e-10 68.6 142 37.3
Rhsim13G0226200 Rhododendron simsii HOM05D000576 ORTHO05D000368 1.3e-09 67.8 177 32.8
CSS0005465 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 8.5e-09 65.1 249 26.9
Rhsim12G0067700 Rhododendron simsii HOM05D000312 ORTHO05D000221 8.5e-09 65.1 130 35.4
RcHm_v2.0_Chr3g0480841 Rosa chinensis HOM05D000576 ORTHO05D000368 1.1e-08 64.7 256 28.9
MD15G1165800 Malus domestica HOM05D000576 ORTHO05D000368 1.4e-08 64.3 143 37.1
vmacro04488 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 1.4e-08 64.3 103 36.9
Rhsim12G0069000 Rhododendron simsii HOM05D000312 ORTHO05D000221 1.9e-08 63.9 71 45.1
TPR.G9274 Trifolium pratense HOM05D009500 ORTHO05D000368 1.9e-08 63.9 249 27.7
CSS0016406 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 3.2e-08 63.2 116 35.3
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 3.2e-08 63.2 264 28.8
Actinidia20536 Actinidia chinensis HOM05D000576 ORTHO05D000368 9.4e-08 61.6 127 31.5
Gohir.D05G262500 Gossypium hirsutum HOM05D000312 ORTHO05D000221 1.6e-07 60.8 107 33.6
MBI02_g05998_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 2.1e-07 60.5 252 27.0
Rhsim12G0067900 Rhododendron simsii HOM05D000312 ORTHO05D000221 2.1e-07 60.5 130 33.8
MBI18_g07609_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D000368 2.7e-07 60.1 261 26.4
Manes.10G002300 Manihot esculenta HOM05D000576 ORTHO05D000368 2.7e-07 60.1 117 35.0
QL10p005853 Quercus lobata HOM05D000576 ORTHO05D000368 2.7e-07 60.1 241 28.2
Rhsim07G0234700 Rhododendron simsii HOM05D000312 ORTHO05D000221 2.7e-07 60.1 111 36.9
TPR.G4705 Trifolium pratense HOM05D008175 ORTHO05D000368 2.7e-07 60.1 133 36.1
Cc10_g03500 Coffea canephora HOM05D000312 ORTHO05D000221 3.6e-07 59.7 74 41.9
Potri.017G092301 Populus trichocarpa HOM05D008175 ORTHO05D000368 3.6e-07 59.7 94 39.4
MBI03_g20843_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 4.7e-07 59.3 138 34.8
Gorai.009G274400 Gossypium raimondii HOM05D000312 ORTHO05D000221 6.1e-07 58.9 78 41.0
Hma1.2p1_0189F.1_g082840 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 6.1e-07 58.9 131 33.6
Lsat_1_v5_gn_6_113140 Lactuca sativa HOM05D000312 ORTHO05D000221 6.1e-07 58.9 74 43.2
MBI18_g07602_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D008290 6.1e-07 58.9 117 33.3
Sopen09g031780 Solanum pennellii HOM05D006683 ORTHO05D008629 6.1e-07 58.9 126 34.1
Thecc.08G020800 Theobroma cacao HOM05D000312 ORTHO05D000221 6.1e-07 58.9 78 41.0
Medtr7g114090 Medicago truncatula HOM05D009500 ORTHO05D000368 8.0e-07 58.5 106 39.6
vmacro04489 Vaccinium macrocarpon HOM05D000312 ORTHO05D000221 1.0e-06 58.2 74 43.2
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 1.4e-06 57.8 80 42.5
COL.COLO4_26386 Corchorus olitorius HOM05D000312 ORTHO05D000221 1.8e-06 57.4 74 41.9
Manes.03G198700 Manihot esculenta HOM05D000576 ORTHO05D000368 1.8e-06 57.4 138 35.5
Thecc.02G282900 Theobroma cacao HOM05D000576 ORTHO05D000368 1.8e-06 57.4 249 26.1
Hma1.2p1_0189F.1_g082810 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 2.3e-06 57.0 53 49.1
Hma1.2p1_0189F.1_g082830 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 2.3e-06 57.0 152 32.2
QL10p004673 Quercus lobata HOM05D000576 ORTHO05D000368 2.3e-06 57.0 259 28.2
GSVIVG01016843001 Vitis vinifera HOM05D001477 ORTHO05D001182 2.3e-06 57.0 98 35.7
Dinv36032 Davidia involucrata HOM05D000312 ORTHO05D000221 3.0e-06 56.6 74 41.9
Medtr2g047858 Medicago truncatula HOM05D000312 ORTHO05D000221 3.0e-06 56.6 79 41.8
ECA246G2564 Erigeron canadensis HOM05D000312 ORTHO05D000221 3.9e-06 56.2 74 41.9
QL10p005342 Quercus lobata HOM05D000576 ORTHO05D000368 3.9e-06 56.2 214 28.5
arahy.Tifrunner.gnm1.ann1.S3SMBV Arachis hypogaea HOM05D000312 ORTHO05D000221 5.2e-06 55.8 75 41.3
arahy.Tifrunner.gnm1.ann1.X6923X Arachis hypogaea HOM05D000312 ORTHO05D000221 5.2e-06 55.8 75 41.3
CSS0038081 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 5.2e-06 55.8 125 29.6
Medtr1g021820 Medicago truncatula HOM05D000312 ORTHO05D000221 5.2e-06 55.8 82 37.8
Ca_13329_v3 Cicer arietinum L. HOM05D000312 ORTHO05D000221 6.7e-06 55.5 74 43.2
HanXRQChr08g0223621 Helianthus annuus HOM05D000312 ORTHO05D000221 6.7e-06 55.5 74 41.9
TPR.G24323 Trifolium pratense HOM05D008175 ORTHO05D010403 6.7e-06 55.5 102 38.2
vmacro02138 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 6.7e-06 55.5 219 27.9
vmacro23074 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 6.7e-06 55.5 219 27.9
Glyma.17G247500 Glycine max HOM05D000312 ORTHO05D000221 8.8e-06 55.1 75 41.3
Hma1.2p1_0189F.1_g082900 Hydrangea macrophylla HOM05D000312 ORTHO05D000221 8.8e-06 55.1 106 33.0
Nitab4.5_0001770g0190 Nicotiana tabacum HOM05D001396 ORTHO05D000493 8.8e-06 55.1 225 26.2
Rhsim12G0067600 Rhododendron simsii HOM05D000312 ORTHO05D000221 8.8e-06 55.1 93 37.6


User provided reference genes

Program Settings