Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.6e-250 869.0 442 100.0
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 5.0e-249 864.0 442 99.5
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.5e-242 840.9 442 97.1
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.9e-242 840.5 442 96.8
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.2e-234 816.2 442 93.7
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.5e-224 782.7 442 88.9
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 3.5e-218 761.5 442 86.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 6.6e-217 757.3 440 85.9
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 4.3e-216 754.6 442 85.3
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.2e-215 753.1 442 85.1
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.1e-215 752.3 441 85.3
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 4.0e-214 748.0 442 84.2
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.0e-213 745.7 438 84.2
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 9.9e-213 743.4 438 84.2
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.9e-212 741.1 438 84.0
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.1e-211 740.0 439 84.5
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-210 736.5 442 87.3
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.1e-210 735.7 439 83.1
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 2.1e-210 735.7 440 83.0
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 4.0e-206 721.5 442 80.8
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 5.3e-206 721.1 439 82.7
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 6.9e-206 720.7 442 80.3
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 6.9e-206 720.7 438 81.5
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.5e-205 719.5 438 80.8
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 4.4e-205 718.0 437 81.0
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 4.4e-205 718.0 442 80.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 4.9e-204 714.5 438 81.1
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.4e-204 714.1 439 80.9
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.4e-204 714.1 439 80.9
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 2.7e-202 708.8 442 79.4
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.0e-201 706.8 437 78.9
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.0e-201 706.8 437 79.4
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 2.3e-201 705.7 432 80.1
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.3e-201 705.7 442 78.5
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 3.0e-201 705.3 438 79.7
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 3.0e-201 705.3 438 81.3
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 3.0e-201 705.3 442 78.3
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.9e-201 704.9 437 79.4
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 8.7e-201 703.7 440 79.3
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 3.3e-200 701.8 442 77.8
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 5.6e-200 701.0 443 79.7
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.6e-199 699.5 438 78.1
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 6.2e-199 697.6 443 78.6
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 8.1e-199 697.2 438 77.9
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.4e-198 695.7 438 78.3
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 6.9e-198 694.1 442 77.6
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.0e-198 693.7 443 78.1
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 9.0e-198 693.7 438 79.7
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.5e-197 693.0 429 79.7
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.0e-197 692.6 443 77.4
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.0e-197 692.6 442 78.7
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 3.4e-197 691.8 443 78.3
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.6e-197 690.6 438 78.5
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 9.9e-197 690.3 439 77.9
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.3e-196 689.9 442 78.7
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.7e-196 689.5 443 77.7
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.2e-196 689.1 444 76.6
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 4.9e-196 688.0 437 78.7
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 6.4e-196 687.6 422 80.1
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 8.4e-196 687.2 438 78.1
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 5.4e-195 684.5 417 79.6
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.2e-194 683.3 437 76.9
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 2.1e-194 682.6 438 76.7
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 2.1e-194 682.6 438 76.7
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.0e-193 680.2 438 76.7
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.8e-193 679.5 437 75.7
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 3.9e-193 678.3 386 86.3
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 5.1e-193 677.9 425 77.9
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 6.7e-193 677.6 437 76.7
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.9e-192 676.0 438 77.2
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 5.6e-192 674.5 438 76.9
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 7.4e-192 674.1 438 76.7
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 9.6e-192 673.7 438 76.9
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 9.6e-192 673.7 430 76.5
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 9.6e-192 673.7 442 75.6
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-191 673.3 422 78.0
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.3e-191 673.3 422 78.0
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.6e-191 672.9 438 76.0
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.6e-191 672.9 437 75.3
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 4.8e-191 671.4 439 75.9
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.4e-190 669.8 438 75.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.2e-189 666.8 422 77.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.0e-189 666.0 387 85.0
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.3e-188 663.3 437 75.3
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.8e-188 661.8 442 77.4
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.4e-188 661.0 429 74.8
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.4e-187 659.8 437 74.6
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 7.1e-187 657.5 410 78.5
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 6.0e-186 654.4 438 74.2
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.3e-185 653.3 419 76.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.8e-185 652.9 443 73.4
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.0e-185 652.1 419 75.9
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 6.7e-185 651.0 423 74.7
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 8.7e-185 650.6 437 73.9
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 2.5e-184 649.0 423 75.2
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.2e-181 640.2 423 73.8
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 2.0e-181 639.4 429 73.9
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.5e-178 628.6 383 78.9
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.1e-176 623.6 438 73.3
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.5e-176 622.5 439 69.2
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.3e-176 622.1 442 73.3
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.5e-172 607.8 441 66.9
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.5e-172 607.8 440 67.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.4e-171 606.7 440 67.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 2.5e-171 605.9 438 72.1
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.7e-167 593.2 429 66.7
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 5.1e-161 571.6 438 67.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 8.2e-159 564.3 422 66.4
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 5.3e-158 561.6 431 63.8
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 6.1e-154 548.1 421 63.9
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 7.4e-152 541.2 440 63.2
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 8.5e-148 527.7 364 72.0
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.0e-145 519.2 382 71.5
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 8.8e-145 517.7 427 57.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.7e-140 503.4 423 58.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.2e-140 503.1 425 58.1
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.1e-138 496.5 429 59.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 4.7e-138 495.4 320 78.4
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.1e-131 474.2 334 72.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 7.0e-126 454.9 441 52.2
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.0e-124 451.1 391 63.9
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 2.4e-110 403.3 439 48.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.2e-106 391.0 456 47.8
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 5.8e-72 275.8 157 83.4
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.5e-48 198.0 429 31.2
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.1e-33 147.1 76 86.8
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 3.8e-31 140.2 384 28.9
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 2.5e-30 137.5 72 87.5
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 5.0e-23 113.2 80 75.0
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 3.5e-16 90.5 50 82.0
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 5.6e-14 83.2 446 24.4
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 9.5e-14 82.4 422 26.5


User provided reference genes

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