Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.4e-162 576.2 299 100.0
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 9.5e-143 510.4 300 91.7
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 4.9e-139 498.0 300 89.0
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 1.6e-137 493.0 259 98.8
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 9.9e-132 473.8 265 94.0
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 2.6e-108 396.0 262 80.2
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 7.9e-81 304.7 265 63.4
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 3.1e-77 292.7 262 63.0
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 1.8e-56 223.8 286 48.6
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 3.0e-56 223.0 264 50.8
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 9.8e-55 218.0 267 51.7
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 3.5e-52 209.5 260 50.8
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 3.5e-52 209.5 258 49.6
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 1.2e-49 201.1 259 49.4
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 8.0e-49 198.4 256 46.1
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 5.2e-48 195.7 260 44.2
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 1.5e-47 194.1 262 48.1
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 3.4e-47 193.0 240 47.5
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 1.4e-45 187.6 260 43.1
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 9.2e-45 184.9 230 47.4
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 3.5e-44 183.0 265 44.5
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 8.6e-43 178.3 246 44.3
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 3.3e-42 176.4 231 46.3
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 5.6e-42 175.6 247 43.7
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 2.1e-41 173.7 259 41.7
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 2.1e-41 173.7 261 45.6
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 8.0e-41 171.8 247 43.7
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 5.2e-40 169.1 224 45.1
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 6.8e-40 168.7 255 43.1
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 8.9e-40 168.3 259 41.7
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 2.0e-39 167.2 260 41.9
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 9.8e-39 164.9 260 41.9
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 9.8e-39 164.9 264 42.0
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 1.3e-38 164.5 197 51.3
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 1.3e-38 164.5 257 42.8
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 2.9e-38 163.3 257 42.0
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 5.4e-37 159.1 258 43.0
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 7.0e-37 158.7 226 43.4
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 7.0e-37 158.7 259 43.6
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 9.2e-37 158.3 259 42.5
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 2.0e-36 157.1 262 41.6
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 2.7e-36 156.8 229 45.4
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 6.0e-36 155.6 234 42.7
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 6.0e-36 155.6 257 41.6
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 3.9e-35 152.9 235 46.0
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 2.5e-34 150.2 236 43.6
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 3.3e-34 149.8 258 38.4
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 9.5e-34 148.3 265 39.2
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 2.1e-33 147.1 258 38.0
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 6.2e-33 145.6 230 42.2
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 3.1e-32 143.3 256 36.3
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 3.1e-32 143.3 223 40.4
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 5.2e-32 142.5 262 37.8
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 6.8e-32 142.1 257 37.4
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 8.9e-32 141.7 269 38.7
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 3.4e-31 139.8 261 37.2
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 3.4e-31 139.8 224 40.2
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 5.8e-31 139.0 229 38.9
Dinv11908 Davidia involucrata HOM05D007404 ORTHO05D009281 7.5e-31 138.7 209 41.6
FAN14G2589 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.7e-30 137.5 172 51.2
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 2.2e-30 137.1 271 38.0
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 2.2e-30 137.1 261 36.0
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 2.2e-30 137.1 223 38.1
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 4.9e-30 136.0 257 36.2
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 6.4e-30 135.6 262 39.3
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 1.9e-29 134.0 229 38.9
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 1.6e-28 131.0 242 38.8
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 3.0e-27 126.7 226 36.7
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 3.0e-27 126.7 224 37.5
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 5.1e-27 125.9 228 37.7
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 5.1e-27 125.9 241 38.2
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 1.1e-26 124.8 236 39.4
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 4.3e-26 122.9 234 36.8
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 2.3e-24 117.1 217 41.0
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 3.1e-24 116.7 244 34.8
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 3.1e-24 116.7 282 31.6
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 1.2e-23 114.8 276 33.7
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 4.4e-23 112.8 250 37.2
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 9.9e-23 111.7 240 33.3
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 3.7e-22 109.8 230 34.3
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 3.7e-22 109.8 270 35.2
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 4.9e-22 109.4 104 56.7
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 2.4e-21 107.1 306 30.4
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 4.7e-17 92.8 81 51.9
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 6.2e-17 92.4 88 52.3
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 2.0e-15 87.4 80 53.8
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 5.8e-15 85.9 237 30.4
FAN05G4411 Fragaria x ananassa HOM05D007404 ORTHO05D009281 5.8e-15 85.9 129 46.5
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 5.8e-15 85.9 78 52.6
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 7.6e-15 85.5 146 38.4
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 2.2e-14 84.0 91 45.1
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 2.2e-14 84.0 91 45.1
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 2.2e-14 84.0 91 45.1
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 2.2e-14 84.0 91 45.1
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 2.2e-14 84.0 91 45.1
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 2.9e-14 83.6 91 45.1
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 3.8e-14 83.2 108 39.8
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 4.9e-14 82.8 91 46.2
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 1.1e-13 81.6 99 41.4
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 2.4e-13 80.5 82 46.3
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 5.4e-13 79.3 241 27.8
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 1.6e-09 67.8 99 40.4
GSVIVG01022504001 Vitis vinifera HOM05D007404 ORTHO05D009281 5.3e-08 62.8 104 40.4
AagrBONN_evm.TU.Sc2ySwM_340.357 Anthoceros agrestis HOM05D007404 ORTHO05D009281 1.7e-06 57.8 64 45.3


User provided reference genes

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