Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 9.4e-237 823.2 422 100.0
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 8.0e-212 740.3 422 91.7
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 1.2e-204 716.5 422 89.3
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 5.4e-200 701.0 422 87.9
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 4.3e-189 664.8 420 82.9
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.9e-152 543.1 413 70.2
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 3.0e-150 535.8 412 69.9
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.1e-131 474.2 413 61.3
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.4e-131 473.8 419 60.1
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 5.3e-131 471.9 414 61.6
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 5.3e-131 471.9 408 61.8
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 8.5e-129 464.5 404 62.6
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 1.6e-127 460.3 416 59.1
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 3.9e-126 455.7 422 58.3
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 5.1e-126 455.3 409 59.2
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 5.1e-126 455.3 422 56.4
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 8.8e-126 454.5 425 59.1
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 3.3e-125 452.6 426 56.6
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 3.3e-125 452.6 436 56.7
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 3.3e-125 452.6 415 58.3
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 4.8e-124 448.7 410 59.0
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 6.3e-124 448.4 417 58.0
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 6.3e-124 448.4 418 57.9
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 8.2e-124 448.0 387 62.5
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 2.4e-123 446.4 420 57.6
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 6.9e-123 444.9 415 57.3
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.0e-121 441.0 421 56.8
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.0e-121 441.0 418 56.2
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 1.0e-121 441.0 419 57.5
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 3.8e-121 439.1 410 56.8
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 6.5e-121 438.3 415 57.3
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 9.4e-120 434.5 408 56.6
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 1.2e-119 434.1 409 57.7
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 1.6e-119 433.7 416 55.8
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 2.1e-119 433.3 405 57.3
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 2.7e-119 433.0 414 58.0
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.0e-118 431.0 424 53.3
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 1.0e-118 431.0 410 56.1
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 2.3e-118 429.9 420 57.4
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 3.9e-118 429.1 407 56.3
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 2.0e-117 426.8 409 57.0
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 2.0e-117 426.8 415 56.1
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 7.4e-117 424.9 409 56.2
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 1.7e-116 423.7 426 52.6
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 2.2e-116 423.3 405 57.0
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 2.8e-116 422.9 410 57.1
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 7.0e-115 418.3 410 55.1
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 3.4e-114 416.0 413 56.2
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 8.5e-113 411.4 425 54.6
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 1.9e-112 410.2 416 55.8
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 8.0e-111 404.8 409 54.3
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.0e-111 404.8 405 53.6
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 3.0e-110 402.9 407 55.5
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 3.0e-110 402.9 410 53.7
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 8.8e-110 401.4 425 53.2
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 5.7e-109 398.7 410 53.9
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 1.7e-108 397.1 413 54.7
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 1.7e-108 397.1 413 54.7
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.4e-107 394.0 404 53.0
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 1.4e-107 394.0 423 53.2
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.4e-107 394.0 408 53.2
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.8e-107 393.7 412 53.6
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 2.4e-107 393.3 409 51.8
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.2e-106 391.0 412 53.4
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.6e-106 390.6 418 52.6
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.0e-106 390.2 408 52.9
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.6e-106 389.8 407 53.1
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 5.9e-106 388.7 421 51.8
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 5.9e-106 388.7 404 52.7
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 1.0e-105 387.9 410 53.2
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 1.3e-105 387.5 416 50.0
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.7e-105 387.1 410 53.2
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 2.2e-105 386.7 407 52.1
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 2.2e-105 386.7 408 52.5
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 2.2e-105 386.7 408 52.5
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 1.5e-104 384.0 420 51.2
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.9e-104 383.6 420 51.2
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.9e-104 383.6 420 52.1
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 3.2e-104 382.9 411 52.1
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.6e-103 380.6 421 51.8
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 6.1e-103 378.6 408 53.2
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.0e-103 378.3 379 54.4
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.0e-102 377.9 408 50.2
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 1.4e-102 377.5 407 52.1
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.8e-102 377.1 421 51.5
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 5.7e-101 372.1 402 52.0
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 3.7e-100 369.4 411 49.6
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 2.2e-97 360.1 422 49.1
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 2.2e-97 360.1 422 49.1
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 2.2e-97 360.1 422 49.1
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 1.5e-96 357.5 419 48.7
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 1.5e-96 357.5 352 55.1
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 7.2e-96 355.1 422 48.3
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 3.6e-95 352.8 402 47.5
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 4.7e-95 352.4 413 48.9
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 8.0e-95 351.7 448 46.0
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 3.0e-94 349.7 375 51.2
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.0e-93 347.1 376 50.5
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 2.8e-92 343.2 407 47.7
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 4.0e-86 322.8 422 46.2
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 3.4e-85 319.7 288 61.8
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 1.8e-83 313.9 232 67.7
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 1.8e-83 313.9 232 67.7
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 2.4e-83 313.5 352 50.0
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 3.7e-76 289.7 417 39.1
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 2.7e-74 283.5 413 40.9
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 4.6e-74 282.7 297 53.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.1e-70 271.6 351 45.6
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 2.9e-68 263.5 231 58.0
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 8.3e-68 261.9 406 38.4
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.2e-66 258.1 227 59.5
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 9.9e-61 238.4 217 54.4
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 5.4e-59 232.6 219 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.1e-54 216.9 394 35.5
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 5.2e-54 216.1 228 49.1
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 7.6e-53 212.2 346 39.0
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 1.4e-51 208.0 205 53.7
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 2.1e-47 194.1 150 67.3
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 2.8e-47 193.7 139 71.2
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.6e-47 193.4 155 67.1
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.4e-46 191.4 150 66.0
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 9.0e-46 188.7 194 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 2.0e-45 187.6 269 43.9
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 8.4e-44 182.2 185 50.3
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 4.0e-38 163.3 260 42.7
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.2e-37 161.8 230 41.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.3e-36 158.3 365 31.2
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.1e-35 155.2 146 56.8
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.8e-30 137.9 137 52.6
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 4.5e-29 133.3 113 62.8
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.5e-29 133.3 117 55.6
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 6.4e-28 129.4 134 51.5
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 1.8e-22 111.3 142 49.3
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 4.0e-22 110.2 142 49.3
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.0e-21 107.8 342 26.0
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.1e-18 97.8 112 49.1
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 1.3e-12 78.6 202 27.7
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 2.9e-12 77.4 92 47.8
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 4.2e-11 73.6 92 45.7
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 1.0e-09 68.9 69 55.1
Actinidia25580 Actinidia chinensis HOM05D001741 ORTHO05D002196 1.5e-08 65.1 191 29.3
Lsat_1_v5_gn_4_80361 Lactuca sativa HOM05D001741 ORTHO05D002196 2.5e-08 64.3 153 30.1
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 5.7e-08 63.2 165 29.1
RhsimUnG0231700 Rhododendron simsii HOM05D001741 ORTHO05D002196 5.7e-08 63.2 165 29.1
Actinidia33101 Actinidia chinensis HOM05D001741 ORTHO05D002196 1.7e-07 61.6 165 28.5
COL.COLO4_28099 Corchorus olitorius HOM05D001741 ORTHO05D002196 2.8e-07 60.8 191 26.2
ECA246G2326 Erigeron canadensis HOM05D001741 ORTHO05D002196 2.8e-07 60.8 191 28.3
Lsat_1_v5_gn_5_13660 Lactuca sativa HOM05D001741 ORTHO05D002196 2.8e-07 60.8 193 26.9
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 2.8e-07 60.8 185 27.0
CDE05G1334 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 4.8e-07 60.1 191 28.8
DCAR_026227 Daucus carota HOM05D001741 ORTHO05D002196 4.8e-07 60.1 191 28.3
Lj2g0016570 Lotus japonicus HOM05D001741 ORTHO05D002196 4.8e-07 60.1 185 27.6
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 6.3e-07 59.7 185 27.0
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.3e-07 59.7 185 27.0
vmacro19201 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 6.3e-07 59.7 165 29.1
Aqoxy5G03395 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 8.2e-07 59.3 153 28.1
Aqoxy7G00969 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 8.2e-07 59.3 153 28.1
Oeu000634.1 Olea europaea HOM05D001741 ORTHO05D002196 8.2e-07 59.3 202 26.7
PGR044G0132 Punica granatum HOM05D001741 ORTHO05D002196 8.2e-07 59.3 207 25.6
CSS0031290 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.1e-06 58.9 191 27.2
Potri.012G097000 Populus trichocarpa HOM05D001741 ORTHO05D002196 1.1e-06 58.9 208 26.9
Phvul.003G210600 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 1.4e-06 58.5 191 27.2
TAR374G0301 Trochodendron aralioides HOM05D001741 ORTHO05D002196 1.4e-06 58.5 151 26.5
Glyma.02G020200 Glycine max HOM05D001741 ORTHO05D002196 1.8e-06 58.2 146 30.8
HanXRQChr09g0273111 Helianthus annuus HOM05D001741 ORTHO05D002196 1.8e-06 58.2 191 26.7
Migut.I00503 Erythranthe guttata HOM05D001741 ORTHO05D002196 2.4e-06 57.8 208 26.9
MSTRG.11280 Avicennia marina HOM05D001741 ORTHO05D002196 3.1e-06 57.4 208 27.9
Cc04_g10020 Coffea canephora HOM05D001741 ORTHO05D002196 3.1e-06 57.4 191 27.7
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 3.1e-06 57.4 150 28.0
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 3.1e-06 57.4 163 27.6
VMungo1215G0164 Vigna mungo HOM05D001741 ORTHO05D002196 3.1e-06 57.4 191 27.7
DCAR_007137 Daucus carota HOM05D001741 ORTHO05D002196 4.1e-06 57.0 203 27.6
Nn3g17147 Nelumbo nucifera HOM05D001741 ORTHO05D002196 4.1e-06 57.0 203 25.6
Nitab4.5_0005560g0020 Nicotiana tabacum HOM05D001741 ORTHO05D002196 4.1e-06 57.0 150 28.0
Zm00001eb160610 Zea mays HOM05D001741 ORTHO05D002196 4.1e-06 57.0 190 26.3
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 5.3e-06 56.6 186 26.9
TAR371G0100 Trochodendron aralioides HOM05D001741 ORTHO05D002196 5.3e-06 56.6 204 25.5
Nitab4.5_0007114g0010 Nicotiana tabacum HOM05D001741 ORTHO05D002196 6.9e-06 56.2 150 27.3
ECA232G3143 Erigeron canadensis HOM05D001741 ORTHO05D002196 9.1e-06 55.8 151 27.8
HanXRQChr05g0155061 Helianthus annuus HOM05D001741 ORTHO05D002196 9.1e-06 55.8 191 24.1
HanXRQChr08g0236781 Helianthus annuus HOM05D001741 ORTHO05D002196 9.1e-06 55.8 191 25.1
unitig_744.g24644 Utricularia gibba HOM05D001741 ORTHO05D002196 9.1e-06 55.8 191 26.2


User provided reference genes

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