Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-75 285.4 146 100.0
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-75 285.4 146 100.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.0e-73 280.0 146 98.6
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.6e-72 274.2 142 99.3
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.7e-41 171.0 307 39.7
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.8e-39 165.6 334 37.1
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 8.2e-39 164.1 334 36.8
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-38 162.9 334 37.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-35 152.9 364 33.8
FAN07G1051 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-34 149.4 83 96.4
FAN21G3487 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-33 147.1 83 96.4
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 2.8e-31 139.0 346 32.9
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.1e-22 110.5 63 79.4
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 1.1e-19 100.5 94 56.4
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 2.1e-18 96.3 62 67.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 6.1e-18 94.7 69 63.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 6.1e-18 94.7 62 66.1
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 3.0e-17 92.4 63 65.1
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 3.0e-17 92.4 70 64.3
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.1e-16 90.5 63 65.1
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 3.3e-16 89.0 63 63.5
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 3.3e-16 89.0 63 63.5
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 3.3e-16 89.0 63 61.9
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 7.4e-16 87.8 90 51.1
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 7.4e-16 87.8 63 61.9
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.3e-15 87.0 63 61.9
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.7e-15 86.7 63 60.3
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.8e-15 85.1 39 100.0
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 8.2e-15 84.3 62 61.3
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.4e-14 83.6 82 51.2
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.4e-14 83.6 61 55.7
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.4e-14 82.8 90 48.9
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 2.4e-14 82.8 90 48.9
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 2.4e-14 82.8 63 60.3
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 3.1e-14 82.4 63 55.6
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 3.1e-14 82.4 63 57.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 3.1e-14 82.4 62 59.7
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 4.1e-14 82.0 87 47.1
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 4.1e-14 82.0 63 58.7
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 4.1e-14 82.0 62 58.1
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.0e-14 81.3 63 58.7
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.2e-13 80.5 60 60.0
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.6e-13 80.1 90 45.6
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.0e-13 79.7 60 60.0
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.6e-13 79.3 66 59.1
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 4.5e-13 78.6 63 55.6
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 4.5e-13 78.6 90 45.6
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 4.5e-13 78.6 87 46.0
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 5.9e-13 78.2 63 55.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 5.9e-13 78.2 66 59.1
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.3e-12 77.0 83 47.0
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 1.3e-12 77.0 69 53.6
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.7e-12 76.6 62 56.5
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 1.7e-12 76.6 62 56.5
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.7e-12 76.6 63 54.0
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 2.2e-12 76.3 63 55.6
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 2.9e-12 75.9 93 43.0
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 3.8e-12 75.5 62 54.8
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 5.0e-12 75.1 62 54.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 5.0e-12 75.1 62 54.8
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 5.0e-12 75.1 62 54.8
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 5.0e-12 75.1 63 52.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 8.5e-12 74.3 63 54.0
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 8.5e-12 74.3 93 43.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.9e-11 73.2 62 53.2
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-11 73.2 55 70.9
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 2.5e-11 72.8 62 53.2
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.5e-11 72.8 63 50.8
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 2.5e-11 72.8 63 50.8
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 2.5e-11 72.8 62 53.2
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 2.5e-11 72.8 62 53.2
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 7.2e-11 71.2 87 42.5
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 9.4e-11 70.9 89 42.7
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.2e-10 70.5 69 53.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.2e-10 70.5 63 46.0
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.6e-10 70.1 77 45.5
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.7e-10 69.3 62 50.0
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 3.6e-10 68.9 63 46.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 4.7e-10 68.6 69 47.8
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.4e-09 67.0 60 50.0
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.4e-09 67.0 65 50.8
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.4e-09 67.0 90 43.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.8e-09 66.6 93 38.7
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.8e-09 66.6 62 46.8
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.0e-09 65.9 63 44.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 8.8e-09 64.3 63 46.0
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 7.5e-08 61.2 61 45.9
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.1e-06 57.4 90 33.3
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 2.4e-06 56.2 63 41.3
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.3e-06 55.1 63 42.9
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 9.1e-06 54.3 63 42.9


User provided reference genes

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