Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4996 Fragaria x ananassa HOM05D001985 ORTHO05D002261 4.9e-85 317.8 162 100.0
FAN14G0113 Fragaria x ananassa HOM05D001985 ORTHO05D002261 3.2e-28 129.0 117 64.1
FAN09G4487 Fragaria x ananassa HOM05D001985 ORTHO05D002261 7.2e-28 127.9 117 63.2
FAN02G1734 Fragaria x ananassa HOM05D001985 ORTHO05D002261 9.4e-28 127.5 117 63.2
FAN05G1015 Fragaria x ananassa HOM05D001985 ORTHO05D002261 4.7e-27 125.2 117 62.4
FAN14G4994 Fragaria x ananassa HOM05D001985 ORTHO05D002261 4.7e-27 125.2 117 63.2
FAN05G1450 Fragaria x ananassa HOM05D001985 ORTHO05D002261 8.0e-27 124.4 117 62.4
MD04G1205000 Malus domestica HOM05D001985 ORTHO05D002261 2.7e-19 99.4 123 54.5
Prupe.6G325100 Prunus persica HOM05D001985 ORTHO05D002261 2.0e-17 93.2 123 50.4
CiPaw.08G164400 Carya illinoinensis HOM05D001985 ORTHO05D002261 2.2e-16 89.7 117 48.7
Medtr7g113480 Medicago truncatula HOM05D001985 ORTHO05D002261 2.2e-16 89.7 109 56.9
CANSAT54G1903 Cannabis sativa HOM05D001985 ORTHO05D002261 2.8e-16 89.4 113 50.4
RcHm_v2.0_Chr3g0454961 Rosa chinensis HOM05D001985 ORTHO05D002261 2.8e-16 89.4 117 54.7
QL03p007102 Quercus lobata HOM05D001985 ORTHO05D002261 3.7e-16 89.0 120 45.0
ClCG02G015770 Citrullus lanatus HOM05D001985 ORTHO05D002261 1.1e-15 87.4 102 52.9
Ca_09353_v3 Cicer arietinum L. HOM05D001985 ORTHO05D002261 1.8e-15 86.7 105 53.3
Haze_04192 Corylus avellana HOM05D001985 ORTHO05D002261 1.8e-15 86.7 114 48.2
Ciclev10000570m.g Citrus clementina HOM05D001985 ORTHO05D002261 5.4e-15 85.1 105 51.4
GSVIVG01000079001 Vitis vinifera HOM05D001985 ORTHO05D002261 7.0e-15 84.7 111 49.5
Lj1g0009341 Lotus japonicus HOM05D001985 ORTHO05D002261 9.1e-15 84.3 110 49.1
Sed0003201 Sechium edule HOM05D001985 ORTHO05D002261 1.2e-14 84.0 100 53.0
CsaV3_2G005330 Cucumis sativus L. HOM05D001985 ORTHO05D002261 1.6e-14 83.6 102 49.0
PGR031G1217 Punica granatum HOM05D001985 ORTHO05D002261 1.6e-14 83.6 114 46.5
Cfa006592 Carpinus fangiana HOM05D001985 ORTHO05D002261 2.7e-14 82.8 114 47.4
MELO3C004255.2 Cucumis melo HOM05D001985 ORTHO05D002261 2.7e-14 82.8 102 49.0
Phvul.006G091700 Phaseolus vulgaris HOM05D001985 ORTHO05D002261 5.9e-14 81.6 107 49.5
TAR365G0755 Trochodendron aralioides HOM05D001985 ORTHO05D002261 5.9e-14 81.6 105 49.5
Cc02_g33370 Coffea canephora HOM05D001985 ORTHO05D002261 7.7e-14 81.3 130 48.5
Gohir.A11G265300 Gossypium hirsutum HOM05D001985 ORTHO05D002261 7.7e-14 81.3 110 48.2
Actinidia23636 Actinidia chinensis HOM05D001985 ORTHO05D002261 1.0e-13 80.9 103 49.5
CAN.G1034.43 Capsicum annuum HOM05D001985 ORTHO05D002261 1.3e-13 80.5 110 47.3
Gorai.007G297300 Gossypium raimondii HOM05D001985 ORTHO05D002261 1.3e-13 80.5 110 48.2
Duzib177G1200 Durio zibethinus HOM05D001985 ORTHO05D002261 1.7e-13 80.1 110 48.2
Eucgr.H04494 Eucalyptus grandis HOM05D001985 ORTHO05D002261 1.7e-13 80.1 110 47.3
Gohir.D11G275500 Gossypium hirsutum HOM05D001985 ORTHO05D002261 1.7e-13 80.1 110 48.2
Cpa.g.sc48.59 Carica papaya HOM05D001985 ORTHO05D002261 2.2e-13 79.7 101 49.5
Dinv40291 Davidia involucrata HOM05D001985 ORTHO05D002261 2.2e-13 79.7 108 47.2
Migut.N02010 Erythranthe guttata HOM05D001985 ORTHO05D002261 2.2e-13 79.7 121 46.3
Hma1.2p1_0928F.1_g237750 Hydrangea macrophylla HOM05D001985 ORTHO05D002261 2.2e-13 79.7 101 52.5
COL.COLO4_13461 Corchorus olitorius HOM05D001985 ORTHO05D002261 2.9e-13 79.3 119 47.1
Glyma.19G235100 Glycine max HOM05D001985 ORTHO05D002261 2.9e-13 79.3 108 50.0
Oeu038299.1 Olea europaea HOM05D001985 ORTHO05D002261 3.8e-13 79.0 128 43.8
arahy.Tifrunner.gnm1.ann1.ET6U27 Arachis hypogaea HOM05D001985 ORTHO05D002261 8.5e-13 77.8 120 46.7
EL10Ac4g09356 Beta vulgaris HOM05D001985 ORTHO05D002261 1.5e-12 77.0 115 44.3
Sopen01g042670 Solanum pennellii HOM05D001985 ORTHO05D002261 1.9e-12 76.6 110 43.6
PGSC0003DMG400024739 Solanum tuberosum HOM05D001985 ORTHO05D002261 1.9e-12 76.6 110 43.6
vmacro05014 Vaccinium macrocarpon HOM05D001985 ORTHO05D002261 1.9e-12 76.6 106 49.1
vmacro23278 Vaccinium macrocarpon HOM05D001985 ORTHO05D002261 1.9e-12 76.6 106 49.1
CSS0002188 Camellia sinensis var. sinensis HOM05D001985 ORTHO05D002261 2.5e-12 76.3 117 47.0
Solyc01g099110.4 Solanum lycopersicum HOM05D001985 ORTHO05D002261 2.5e-12 76.3 110 43.6
HPP92_026495 Vanilla planifolia HOM05D001985 ORTHO05D002261 2.5e-12 76.3 99 47.5
Thecc.05G302600 Theobroma cacao HOM05D001985 ORTHO05D002261 3.2e-12 75.9 122 44.3
Aqoxy2G03364 Aquilegia oxysepala HOM05D001985 ORTHO05D002261 4.2e-12 75.5 102 45.1
arahy.Tifrunner.gnm1.ann1.P209V5 Arachis hypogaea HOM05D001985 ORTHO05D002261 4.2e-12 75.5 111 46.8
Sabra13G0023800 Salix brachista HOM05D001985 ORTHO05D002261 4.2e-12 75.5 107 48.6
THA.LOC104818700 Tarenaya hassleriana HOM05D001985 ORTHO05D002261 4.2e-12 75.5 100 50.0
VMungo0540G1471 Vigna mungo HOM05D001985 ORTHO05D002261 4.2e-12 75.5 99 50.5
PSO302G0037 Papaver somniferum HOM05D001985 ORTHO05D002261 5.5e-12 75.1 97 50.5
MBI01_g40486_MAGBIO Magnolia biondii HOM05D001985 ORTHO05D002261 7.2e-12 74.7 101 49.5
Hund07074 Selenicereus undatus HOM05D001985 ORTHO05D002261 7.2e-12 74.7 106 48.1
HPP92_014234 Vanilla planifolia HOM05D001985 ORTHO05D002261 7.2e-12 74.7 99 46.5
SGA_v2.0_scaffold81G26066 Striga asiatica HOM05D001985 ORTHO05D002261 9.5e-12 74.3 101 48.5
PSO170G4776 Papaver somniferum HOM05D001985 ORTHO05D002261 1.2e-11 73.9 95 50.5
Gohir.A11G295400 Gossypium hirsutum HOM05D001985 ORTHO05D002261 1.6e-11 73.6 122 44.3
Nitab4.5_0000137g0160 Nicotiana tabacum HOM05D001985 ORTHO05D002261 1.6e-11 73.6 99 48.5
Nitab4.5_0005541g0020 Nicotiana tabacum HOM05D001985 ORTHO05D002261 1.6e-11 73.6 99 48.5
Potri.013G021400 Populus trichocarpa HOM05D001985 ORTHO05D002261 2.1e-11 73.2 102 49.0
unitig_746.g26853 Utricularia gibba HOM05D001985 ORTHO05D002261 2.1e-11 73.2 101 45.5
Gohir.D11G311500 Gossypium hirsutum HOM05D001985 ORTHO05D002261 3.6e-11 72.4 122 44.3
Gorai.007G342300 Gossypium raimondii HOM05D001985 ORTHO05D002261 3.6e-11 72.4 122 44.3
CDE10G0470 Ceratophyllum demersum HOM05D001985 ORTHO05D002261 6.1e-11 71.6 101 44.6
TWI36G0870 Tripterygium wilfordii HOM05D001985 ORTHO05D002261 6.1e-11 71.6 109 45.0
Aa31LG5G15700 Aethionema arabicum HOM05D001985 ORTHO05D002261 8.0e-11 71.2 113 46.9
Aa31LG5G15690 Aethionema arabicum HOM05D001985 ORTHO05D002261 1.0e-10 70.9 104 49.0
CARHR079710 Cardamine hirsuta HOM05D001985 ORTHO05D002261 1.8e-10 70.1 111 45.0
Lj9A81G10 Lonicera japonica HOM05D001985 ORTHO05D002261 2.3e-10 69.7 96 49.0
SalBow3G2922 Salvia bowleyana HOM05D001985 ORTHO05D002261 3.0e-10 69.3 128 39.1
DCAR_001938 Daucus carota HOM05D001985 ORTHO05D002261 4.0e-10 68.9 96 49.0
HanXRQChr15g0469951 Helianthus annuus HOM05D001985 ORTHO05D002261 4.0e-10 68.9 127 40.2
TWI56G0765 Tripterygium wilfordii HOM05D001985 ORTHO05D002261 5.2e-10 68.6 100 46.0
BcaC05g30133 Brassica carinata HOM05D001985 ORTHO05D002261 6.8e-10 68.2 96 46.9
Lalb_Chr15g0077211 Lupinus albus HOM05D001985 ORTHO05D002261 6.8e-10 68.2 109 45.0
FAN11G3270 Fragaria x ananassa HOM05D001985 ORTHO05D019177 8.8e-10 67.8 147 38.1
A05p42270 Brassica napus HOM05D001985 ORTHO05D002261 1.5e-09 67.0 97 47.4
C05p61850 Brassica napus HOM05D001985 ORTHO05D002261 1.5e-09 67.0 97 47.4
BolC5t34845H Brassica oleracea HOM05D001985 ORTHO05D002261 1.5e-09 67.0 97 47.4
BraA05t23026Z Brassica rapa HOM05D001985 ORTHO05D002261 1.5e-09 67.0 97 47.4
Thhalv10020169m.g Eutrema salsugineum HOM05D001985 ORTHO05D002261 2.6e-09 66.2 97 46.4
Sp3g04230 Schrenkiella parvula HOM05D001985 ORTHO05D002261 2.6e-09 66.2 97 46.4
Lsat_1_v5_gn_9_86101 Lactuca sativa HOM05D001985 ORTHO05D002261 3.4e-09 65.9 94 46.8
Zm00001eb302980 Zea mays HOM05D001985 ORTHO05D002261 9.8e-09 64.3 103 44.7
ATR0332G052 Amborella trichopoda HOM05D001985 ORTHO05D002261 1.3e-08 63.9 95 45.3
AT3G05350 Arabidopsis thaliana HOM05D001985 ORTHO05D002261 1.3e-08 63.9 94 45.7
BcaC05g30152 Brassica carinata HOM05D001985 ORTHO05D002261 2.8e-08 62.8 116 40.5
ECA236G4184 Erigeron canadensis HOM05D001985 ORTHO05D002261 4.9e-08 62.0 84 46.4
Os07g0205700 Oryza sativa ssp. japonica HOM05D001985 ORTHO05D002261 4.9e-08 62.0 74 51.4
HanXRQChr08g0233381 Helianthus annuus HOM05D001985 ORTHO05D002261 1.1e-07 60.8 104 40.4
Mapoly0046s0011 Marchantia polymorpha HOM05D001985 ORTHO05D002261 1.2e-06 57.4 98 38.8


User provided reference genes

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