Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.0e-276 956.1 465 100.0
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.6e-259 897.1 465 94.8
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.0e-257 891.0 467 94.0
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.9e-256 886.3 465 94.2
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 2.0e-240 835.5 474 86.9
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.4e-228 796.2 401 96.5
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.0e-220 768.5 470 81.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.1e-206 723.4 480 75.2
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.9e-206 722.6 473 77.8
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 4.1e-201 704.9 469 75.7
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.8e-188 662.9 465 70.8
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 6.3e-186 654.4 459 71.0
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 6.3e-186 654.4 401 78.1
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 3.2e-185 652.1 476 69.3
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 9.2e-185 650.6 481 69.4
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 5.9e-184 647.9 472 69.1
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.3e-183 646.0 463 70.8
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.9e-182 642.9 485 68.0
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.3e-182 641.0 472 68.6
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.2e-181 640.2 474 68.1
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 6.1e-181 637.9 469 69.1
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 8.9e-180 634.0 406 75.1
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.4e-179 631.7 434 72.4
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 5.8e-179 631.3 471 67.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 9.8e-179 630.6 461 68.5
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 9.8e-179 630.6 399 74.9
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 2.2e-178 629.4 463 69.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 2.2e-178 629.4 475 68.2
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.9e-178 629.0 434 71.9
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 8.3e-178 627.5 434 71.9
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 8.3e-178 627.5 472 68.9
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.1e-177 627.1 469 67.8
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.9e-177 626.3 404 75.0
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 4.1e-177 625.2 468 67.9
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.2e-176 623.6 472 69.3
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.6e-176 623.2 461 69.4
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.6e-176 623.2 467 68.1
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 4.6e-176 621.7 468 67.9
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 6.0e-176 621.3 474 66.0
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 6.0e-176 621.3 474 66.9
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 6.6e-175 617.8 421 71.5
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 1.1e-174 617.1 464 67.5
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.9e-174 616.3 444 69.1
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 4.3e-174 615.1 455 68.1
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 5.6e-174 614.8 471 65.6
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 7.3e-174 614.4 375 77.1
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.3e-174 614.4 396 75.3
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.2e-173 613.6 365 80.0
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.6e-173 613.2 481 64.7
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 3.6e-173 612.1 387 74.4
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 8.1e-173 610.9 406 73.2
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.4e-172 610.1 474 65.6
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.1e-172 609.0 435 69.0
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 5.2e-172 608.2 465 65.2
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 1.2e-171 607.1 434 68.7
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.5e-171 606.7 402 74.1
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.5e-171 606.7 389 73.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 3.4e-171 605.5 471 64.5
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 5.8e-171 604.7 472 64.8
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 7.5e-171 604.4 475 64.2
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 9.8e-171 604.0 454 67.4
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 9.8e-171 604.0 502 62.0
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 4.9e-170 601.7 427 69.8
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 6.4e-170 601.3 389 73.3
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.4e-169 600.1 423 69.7
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 5.4e-169 598.2 466 65.7
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 9.2e-169 597.4 392 72.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 9.2e-169 597.4 473 64.3
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.1e-168 596.3 466 65.0
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 7.8e-168 594.3 468 64.7
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 7.8e-168 594.3 477 63.3
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.0e-167 594.0 463 65.2
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.0e-167 594.0 479 63.3
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.3e-167 593.6 470 64.3
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.3e-167 593.6 476 63.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.7e-167 593.2 358 78.2
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 3.0e-167 592.4 476 63.2
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.6e-165 586.6 429 65.7
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 1.6e-165 586.6 475 62.5
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 2.8e-165 585.9 414 68.8
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 3.6e-165 585.5 463 63.9
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 4.7e-165 585.1 410 69.5
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 6.2e-165 584.7 413 68.8
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 6.2e-165 584.7 424 67.7
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.4e-164 583.6 424 67.5
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-164 583.6 424 67.5
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 1.8e-164 583.2 465 62.8
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-164 582.8 472 62.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-164 582.0 410 68.8
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 4.0e-164 582.0 397 70.5
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 5.2e-164 581.6 419 68.3
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 8.9e-164 580.9 396 69.4
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 2.6e-163 579.3 405 69.4
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 3.4e-163 578.9 409 68.5
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 3.4e-163 578.9 495 61.2
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 5.8e-163 578.2 413 68.5
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.7e-162 576.6 421 67.7
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.9e-162 575.9 468 62.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 3.7e-162 575.5 387 70.3
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 3.7e-162 575.5 413 68.0
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 8.4e-162 574.3 407 68.8
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.7e-159 566.6 441 63.9
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 6.6e-159 564.7 443 63.4
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 6.6e-159 564.7 422 65.9
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.1e-158 563.9 431 64.5
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.5e-158 563.5 493 59.6
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 4.3e-158 562.0 475 59.8
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 6.2e-157 558.1 449 62.4
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.4e-156 556.2 362 74.0
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 7.6e-155 551.2 330 79.4
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.7e-154 550.1 411 66.7
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 5.4e-153 545.0 381 69.0
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 9.3e-153 544.3 366 69.9
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.8e-152 541.2 378 69.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.5e-150 536.2 354 72.6
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.2e-144 517.3 356 68.3
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 3.9e-143 512.3 351 67.8
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 4.3e-142 508.8 344 69.2
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.0e-135 486.1 360 65.6
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 4.2e-129 465.7 410 58.8
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 2.3e-127 459.9 340 66.2
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 8.7e-127 458.0 316 68.0
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 6.3e-125 451.8 461 54.9
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 9.3e-121 438.0 347 62.2
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.6e-120 437.2 342 58.5
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 5.1e-119 432.2 280 73.6
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 2.2e-117 426.8 353 57.8
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 2.0e-115 420.2 351 57.8
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.2e-114 416.8 323 64.1
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 7.2e-113 411.8 259 76.1
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.2e-109 400.2 348 53.7
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.2e-106 390.2 343 53.6
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.0e-102 377.1 392 46.4
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 3.2e-89 333.2 278 61.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 3.1e-84 316.6 344 44.2
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 5.4e-84 315.8 276 60.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 2.7e-75 287.0 340 42.6
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 2.3e-74 283.9 338 45.0
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.3e-66 258.1 143 86.7
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 3.6e-56 223.4 262 50.4
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.6e-54 217.2 140 71.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-40 170.6 283 39.2
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.4e-36 158.3 176 43.2
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 3.2e-36 157.1 176 43.2
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-33 148.3 81 81.5
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.9e-33 147.9 126 61.1
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 5.8e-30 136.3 95 72.6
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 4.8e-24 116.7 82 62.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.4e-23 114.4 104 56.7
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 4.8e-16 90.1 94 45.7
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 9.6e-09 65.9 52 48.1


User provided reference genes

Program Settings