Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 0.0e+00 1111.3 638 100.0
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.2e-301 1036.9 638 92.0
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 5.5e-297 1023.8 638 93.7
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.3e-297 1023.1 638 92.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.7e-286 987.3 638 88.9
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 8.5e-266 920.2 641 83.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.1e-231 805.4 517 90.1
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 3.1e-191 672.5 651 65.3
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 2.2e-181 639.8 513 73.1
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 3.2e-180 636.0 652 60.6
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 5.9e-174 615.1 659 59.0
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 7.9e-171 604.7 651 59.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 3.1e-167 592.8 706 55.0
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 5.1e-162 575.5 671 55.7
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 8.2e-160 568.2 673 57.5
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 7.7e-158 561.6 658 58.2
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 3.2e-156 556.2 651 56.1
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 5.2e-154 548.9 695 56.4
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 6.7e-154 548.5 661 55.4
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 6.7e-154 548.5 687 54.4
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 2.6e-153 546.6 658 55.8
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.7e-153 545.4 654 55.2
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.7e-153 545.4 656 55.5
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 7.4e-153 545.0 658 54.9
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 3.1e-151 539.7 521 62.0
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 4.5e-150 535.8 683 54.0
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.0e-149 534.6 674 52.8
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.3e-149 534.3 637 56.0
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 6.5e-149 531.9 708 54.2
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.2e-148 529.6 491 63.5
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 4.7e-147 525.8 682 53.5
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 6.1e-147 525.4 683 53.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 8.2e-144 515.0 710 52.5
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 5.3e-143 512.3 657 54.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 9.1e-143 511.5 651 54.2
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.2e-142 511.1 676 53.3
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 2.7e-139 500.0 691 52.4
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.5e-137 494.2 656 50.3
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.8e-136 490.0 773 48.9
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 4.8e-136 489.2 773 48.9
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 5.9e-134 482.3 550 59.5
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.1e-132 478.0 659 51.0
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 5.5e-132 475.7 664 50.3
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 3.6e-131 473.0 661 50.4
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 3.0e-130 469.9 660 52.0
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 4.0e-130 469.5 554 56.7
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 2.0e-129 467.2 655 50.8
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.4e-129 466.1 646 49.5
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.4e-127 460.3 660 50.0
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 3.1e-127 459.9 657 49.8
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 3.1e-127 459.9 717 47.1
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.6e-126 457.6 703 48.4
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.0e-125 454.9 635 48.2
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 3.8e-125 453.0 652 50.8
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 8.6e-125 451.8 658 48.5
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 8.6e-125 451.8 685 48.9
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 5.6e-124 449.1 654 50.8
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 8.9e-122 441.8 707 46.1
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.2e-121 441.4 644 49.7
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.6e-121 440.3 640 47.3
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 9.8e-121 438.3 668 46.1
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 2.9e-120 436.8 682 46.3
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 2.7e-118 430.3 643 49.0
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 6.0e-118 429.1 527 55.4
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.9e-116 424.1 620 48.2
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 5.6e-116 422.5 612 46.6
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 5.6e-116 422.5 516 53.7
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 3.6e-115 419.9 618 49.7
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 4.7e-115 419.5 806 42.3
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 2.3e-114 417.2 621 48.5
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 8.9e-114 415.2 650 46.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.2e-113 414.8 619 47.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 2.0e-113 414.1 625 48.5
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.4e-113 413.3 498 52.8
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 9.8e-113 411.8 412 61.9
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.3e-112 411.4 631 48.2
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.1e-111 408.3 505 51.9
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.4e-111 407.1 513 52.4
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.4e-111 406.0 483 53.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.7e-110 403.7 636 48.6
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 6.6e-109 399.1 695 42.2
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.9e-108 397.5 551 48.8
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.2e-107 394.8 553 50.8
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 3.6e-107 393.3 632 47.0
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 3.6e-107 393.3 624 47.9
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 6.2e-107 392.5 621 47.2
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 6.2e-107 392.5 621 47.2
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.1e-107 392.1 498 50.8
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.8e-106 391.0 653 42.7
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 6.8e-106 389.0 695 42.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 4.4e-105 386.3 628 46.5
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 2.2e-104 384.0 383 68.1
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.9e-96 357.1 659 44.3
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.4e-95 352.8 410 55.6
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.9e-92 344.4 447 53.2
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.8e-90 337.8 380 55.5
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.9e-88 330.5 261 70.5
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 5.4e-87 326.2 263 66.5
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 5.6e-84 316.2 277 62.5
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.6e-83 314.7 641 37.6
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.0e-81 307.8 414 52.4
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.0e-81 307.8 414 52.4
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.1e-78 297.7 623 38.0
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.8e-75 286.6 319 53.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.7e-67 260.4 264 61.0
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.0e-65 254.6 312 48.4
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.6e-54 216.9 378 45.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 3.0e-53 214.2 376 40.2
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 7.4e-52 209.5 395 41.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.4e-49 200.7 245 49.8
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.3e-43 182.2 171 60.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.2e-38 165.6 139 62.6
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 7.4e-36 156.4 139 61.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.9e-31 141.7 145 55.2
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.2e-31 141.0 247 45.3
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 4.2e-31 140.6 113 69.0
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.4e-29 135.6 113 67.3
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 3.1e-26 124.4 194 44.3
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.3e-24 119.0 269 39.4
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 6.3e-19 100.1 395 27.1
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 2.0e-17 95.1 294 30.3
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 2.3e-16 91.7 79 59.5
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.6e-14 85.5 168 43.5
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.0e-12 78.6 70 61.4
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.8e-12 76.3 107 44.9
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 9.5e-07 59.7 125 46.4
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.7e-06 57.4 80 47.5
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 8.0e-06 56.6 145 39.3


User provided reference genes

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