Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g08240 Fragaria vesca HOM05D017371 ORTHO05D017946 6.7e-63 243.8 121 100.0
FAN14G4562 Fragaria x ananassa HOM05D017371 ORTHO05D017946 6.7e-63 243.8 121 100.0
FAN09G0620 Fragaria x ananassa HOM05D000519 ORTHO05D017946 2.6e-22 109.0 116 47.4
MD04G1217400 Malus domestica HOM05D000519 ORTHO05D017946 1.1e-20 103.6 119 47.1
Prupe.6G335700 Prunus persica HOM05D017371 ORTHO05D017946 5.4e-20 101.3 117 43.6
FvH4_6g03900 Fragaria vesca HOM05D000519 ORTHO05D017946 9.5e-17 90.5 120 42.5
MD12G1232100 Malus domestica HOM05D000519 ORTHO05D017946 5.2e-15 84.7 99 43.4
RcHm_v2.0_Chr3g0452681 Rosa chinensis HOM05D000519 ORTHO05D000959 6.4e-13 77.8 108 41.7
FvH4_3g34980 Fragaria vesca HOM05D017371 ORTHO05D017946 1.1e-12 77.0 101 44.6
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 3.2e-12 75.5 108 42.6
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 1.3e-10 70.1 105 42.9
Prupe.6G335600 Prunus persica HOM05D017371 ORTHO05D017946 8.6e-10 67.4 76 42.1
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.5e-09 65.9 95 36.8
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 3.3e-09 65.5 76 39.5
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 4.3e-09 65.1 115 38.3
RcHm_v2.0_Chr5g0010541 Rosa chinensis HOM05D000519 ORTHO05D019175 5.6e-09 64.7 111 36.9
RcHm_v2.0_Chr5g0010601 Rosa chinensis HOM05D000519 ORTHO05D019175 5.6e-09 64.7 113 35.4
Lsat_1_v5_gn_1_114741 Lactuca sativa HOM05D000519 ORTHO05D000959 9.5e-09 63.9 100 36.0
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 1.6e-08 63.2 76 38.2
FAN02G0204 Fragaria x ananassa HOM05D000519 ORTHO05D000959 2.1e-08 62.8 100 38.0
FAN21G2877 Fragaria x ananassa HOM05D017371 ORTHO05D035286 2.1e-08 62.8 112 37.5
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 2.1e-08 62.8 76 40.8
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 2.1e-08 62.8 97 37.1
MD05G1359200 Malus domestica HOM05D000519 ORTHO05D000959 3.6e-08 62.0 82 42.7
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 3.6e-08 62.0 76 40.8
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 4.7e-08 61.6 117 32.5
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 4.7e-08 61.6 94 38.3
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 6.2e-08 61.2 90 42.2
PGSC0003DMG402023603 Solanum tuberosum HOM05D000519 ORTHO05D000959 6.2e-08 61.2 76 38.2
FvH4_3g19830 Fragaria vesca HOM05D017371 ORTHO05D035286 8.1e-08 60.8 111 36.0
FAN11G0768 Fragaria x ananassa HOM05D017371 ORTHO05D035286 8.1e-08 60.8 111 36.0
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.1e-07 60.5 112 36.6
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 1.1e-07 60.5 76 39.5
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 1.1e-07 60.5 76 39.5
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 1.1e-07 60.5 76 39.5
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.4e-07 60.1 76 39.5
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.8e-07 59.7 95 34.7
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 1.8e-07 59.7 108 38.9
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 100 33.0
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 3.1e-07 58.9 76 38.2
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 4.0e-07 58.5 102 40.2
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 4.0e-07 58.5 93 37.6
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 5.2e-07 58.2 101 35.6
MD05G1358700 Malus domestica HOM05D000519 ORTHO05D000959 6.8e-07 57.8 102 35.3
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 8.9e-07 57.4 107 35.5
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 1.5e-06 56.6 76 40.8
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 2.0e-06 56.2 95 36.8
FvH4_4g30070 Fragaria vesca HOM05D000519 ORTHO05D019175 2.0e-06 56.2 100 37.0
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.0e-06 56.2 95 32.6
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.0e-06 56.2 95 32.6
Prupe.6G215700 Prunus persica HOM05D000519 ORTHO05D000959 2.0e-06 56.2 91 40.7
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 106 33.0
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 3.4e-06 55.5 118 31.4
RcHm_v2.0_Chr5g0009751 Rosa chinensis HOM05D000519 ORTHO05D000959 3.4e-06 55.5 97 36.1
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 4.4e-06 55.1 83 34.9
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 4.4e-06 55.1 95 36.8
CDE07G0775 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 4.4e-06 55.1 80 31.2
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 4.4e-06 55.1 85 36.5
BcaNung00187 Brassica carinata HOM05D000519 ORTHO05D000959 5.8e-06 54.7 109 35.8
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 5.8e-06 54.7 98 38.8
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 5.8e-06 54.7 98 38.8
CARHR126700 Cardamine hirsuta HOM05D000519 ORTHO05D000959 5.8e-06 54.7 95 33.7
FvH4_4g30060 Fragaria vesca HOM05D000519 ORTHO05D019175 5.8e-06 54.7 86 37.2
FAN06G3217 Fragaria x ananassa HOM05D000519 ORTHO05D000959 5.8e-06 54.7 95 34.7
FAN07G2456 Fragaria x ananassa HOM05D000519 ORTHO05D019175 5.8e-06 54.7 78 34.6
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 5.8e-06 54.7 76 38.2
RcHm_v2.0_Chr2g0140821 Rosa chinensis HOM05D000519 ORTHO05D000959 5.8e-06 54.7 104 31.7
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 5.8e-06 54.7 114 34.2
BcaNung00185 Brassica carinata HOM05D000519 ORTHO05D000959 7.6e-06 54.3 112 34.8
Thhalv10026611m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 7.6e-06 54.3 110 33.6


User provided reference genes

Program Settings