Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.1e-156 554.7 277 100.0
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 3.5e-155 551.6 277 99.6
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.8e-151 539.3 277 98.2
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.4e-150 534.6 277 97.5
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 4.4e-142 508.1 279 92.5
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.0e-138 494.6 275 92.7
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 2.4e-108 396.0 296 72.0
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 5.1e-106 388.3 290 72.4
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 6.6e-106 387.9 290 72.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.2e-101 372.9 286 70.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 4.9e-101 371.7 284 69.4
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 4.1e-100 368.6 271 72.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 7.1e-100 367.9 285 68.1
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.9e-98 362.1 281 68.7
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.5e-97 359.4 281 68.3
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 7.3e-97 357.8 248 75.0
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.6e-96 356.7 300 67.0
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.6e-96 356.7 267 71.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.1e-96 356.3 285 66.7
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 3.6e-96 355.5 264 72.0
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 8.1e-96 354.4 217 81.1
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 8.1e-96 354.4 272 69.1
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.1e-95 354.0 267 71.9
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 4.0e-95 352.1 250 72.4
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.0e-95 352.1 216 81.0
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.2e-95 351.7 250 72.0
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 6.8e-95 351.3 219 80.8
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 2.0e-94 349.7 274 67.5
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.0e-94 349.7 215 80.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.4e-94 348.6 235 76.2
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 4.4e-94 348.6 214 80.8
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 7.6e-94 347.8 284 67.6
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 7.6e-94 347.8 280 66.1
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 9.9e-94 347.4 277 68.6
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 1.3e-93 347.1 214 80.8
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.3e-93 347.1 209 81.8
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.2e-93 346.3 274 67.9
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 4.9e-93 345.1 216 80.6
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.9e-93 345.1 214 81.3
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 4.9e-93 345.1 214 78.0
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 6.4e-93 344.7 302 64.2
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.1e-92 344.0 281 66.5
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 214 79.0
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.4e-92 342.8 214 79.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 4.2e-92 342.0 214 79.0
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 7.1e-92 341.3 216 79.6
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.6e-91 340.1 216 80.1
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.1e-91 339.7 213 80.3
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.1e-91 339.7 225 75.6
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.1e-91 339.7 216 79.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 2.7e-91 339.3 214 79.0
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.7e-91 339.3 298 62.4
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 3.5e-91 339.0 217 77.9
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 6.0e-91 338.2 216 78.2
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.7e-90 336.7 213 78.9
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 3.0e-90 335.9 213 79.8
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 3.0e-90 335.9 213 79.8
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.9e-90 335.5 226 74.8
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 5.1e-90 335.1 273 66.7
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 6.6e-90 334.7 215 76.7
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 6.6e-90 334.7 213 78.4
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 6.6e-90 334.7 213 78.4
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.1e-89 334.0 243 71.2
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 4.3e-89 332.0 283 64.0
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.3e-89 332.0 273 67.0
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 4.3e-89 332.0 215 77.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 5.6e-89 331.6 250 69.6
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 9.6e-89 330.9 239 70.7
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.3e-88 330.5 282 65.2
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.3e-88 330.5 274 64.2
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 1.1e-87 327.4 200 79.5
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.4e-87 327.0 253 66.0
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 1.8e-87 326.6 198 80.8
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.8e-87 326.6 279 63.1
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.4e-87 326.2 239 71.1
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 3.1e-87 325.9 275 62.5
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.0e-87 325.5 250 65.6
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.9e-87 324.7 247 69.2
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.9e-87 324.7 247 69.2
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 3.4e-86 322.4 279 63.1
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.9e-84 316.6 224 74.6
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 2.4e-84 316.2 308 60.1
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 3.2e-84 315.8 183 80.9
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 7.1e-84 314.7 183 80.3
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 6.0e-83 311.6 196 78.6
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.9e-81 306.6 283 62.5
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 2.5e-81 306.2 208 72.1
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 5.6e-81 305.1 173 85.0
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 4.8e-80 302.0 257 65.0
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 4.0e-79 298.9 172 85.5
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 5.8e-78 295.0 218 69.7
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 5.8e-78 295.0 309 55.7
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.3e-77 293.9 203 71.4
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 8.4e-77 291.2 217 66.4
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.7e-75 286.2 210 68.1
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 8.7e-74 281.2 251 62.9
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 3.3e-73 279.3 188 72.3
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 4.3e-73 278.9 199 70.4
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.1e-71 274.2 194 72.2
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.1e-68 264.2 212 60.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.4e-68 263.8 222 65.3
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.3e-66 257.3 198 67.2
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.3e-66 256.5 295 53.2
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.3e-64 250.8 152 82.9
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 7.4e-57 224.9 202 61.9
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 2.6e-54 216.5 213 56.3
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.5e-52 209.9 121 81.8
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.7e-49 198.7 110 86.4
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.4e-46 189.5 224 46.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.2e-45 186.8 218 51.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 2.2e-45 186.8 223 45.3
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 7.9e-43 178.3 177 61.0
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 2.0e-41 173.7 211 46.9
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.6e-41 173.3 120 74.2
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.1e-39 167.9 97 82.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 7.0e-39 165.2 97 81.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 4.2e-36 156.0 180 53.3
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 1.2e-33 147.9 272 39.0
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.8e-32 143.3 76 88.2
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.7e-30 136.7 174 47.7
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 4.5e-30 136.0 80 80.0
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 8.5e-29 131.7 78 80.8
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.2e-27 127.9 77 81.8
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 8.8e-18 95.1 68 64.7
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 4.4e-17 92.8 61 75.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 7.5e-17 92.0 135 51.1
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 9.8e-17 91.7 52 80.8
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 3.1e-15 86.7 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.1e-15 86.3 51 78.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 5.0e-13 79.3 48 75.0
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 7.3e-12 75.5 55 67.3
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 5.2e-10 69.3 47 68.1
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.9e-08 63.5 47 66.0


User provided reference genes

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