Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.2e-63 243.4 127 100.0
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 9.2e-63 243.4 127 100.0
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 7.8e-62 240.4 127 99.2
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.8e-62 240.4 127 99.2
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.0e-61 238.4 127 97.6
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-60 236.5 127 96.9
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.5e-60 235.3 127 96.1
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.2e-59 233.0 127 96.1
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 7.6e-57 223.8 127 90.6
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 7.6e-57 223.8 127 90.6
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.3e-56 223.0 127 91.3
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.1e-55 219.9 128 92.2
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.1e-55 219.9 128 91.4
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 90.6
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.8
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 5.4e-55 217.6 128 89.8
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.8
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 88.2
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 87.4
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 88.2
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.6e-54 216.1 127 86.6
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.1e-54 215.7 127 86.6
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.1e-54 215.7 127 86.6
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 86.6
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 7.8e-54 213.8 127 85.8
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 7.8e-54 213.8 128 89.8
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 85.8
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 86.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 86.6
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.7e-53 212.6 128 89.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 86.6
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 3.0e-53 211.8 127 85.0
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 3.0e-53 211.8 126 84.9
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.8
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 84.3
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 6.6e-53 210.7 125 86.4
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 6.6e-53 210.7 126 87.3
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.1e-52 209.9 124 86.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.1e-52 209.9 123 89.4
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.8
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 84.3
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.9e-52 209.1 129 85.3
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 2.5e-52 208.8 127 85.8
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 3.3e-52 208.4 123 88.6
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 84.3
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 7.3e-52 207.2 129 82.9
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 82.7
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.2e-51 206.5 127 83.5
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 1.6e-51 206.1 125 84.8
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 84.3
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 82.7
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 84.3
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.8e-51 205.3 127 81.9
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 6.2e-51 204.1 127 82.7
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.8e-50 202.6 126 81.0
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 81.9
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 2.4e-50 202.2 124 83.9
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.1
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 82.7
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 6.9e-50 200.7 126 82.5
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 9.0e-50 200.3 127 78.7
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 129 82.2
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.2e-49 199.9 129 81.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 78.7
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.5e-49 199.5 129 79.1
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.0e-49 199.1 126 78.6
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 2.0e-49 199.1 126 80.2
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.0e-49 199.1 129 81.4
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 2.0e-49 199.1 126 80.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 4.4e-49 198.0 126 81.0
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 4.4e-49 198.0 129 79.8
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 5.8e-49 197.6 128 80.5
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 7.6e-49 197.2 126 79.4
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 1.7e-48 196.1 124 79.0
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 3.8e-48 194.9 127 79.5
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 3.8e-48 194.9 129 78.3
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 4.9e-48 194.5 122 82.8
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 1.1e-47 193.4 127 74.8
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 78.7
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.9e-47 192.6 124 79.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.4e-47 192.2 127 78.0
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 5.4e-47 191.0 126 78.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 7.1e-47 190.7 130 78.5
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 7.1e-47 190.7 131 78.6
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 75.6
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-46 189.1 122 78.7
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 75.6
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.1e-46 189.1 122 80.3
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.7e-46 188.7 122 78.7
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.5e-46 188.3 125 78.4
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 3.5e-46 188.3 130 76.9
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 3.5e-46 188.3 125 77.6
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 6.0e-46 187.6 127 74.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.0e-45 186.8 131 74.0
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.3e-45 186.4 127 74.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 3.0e-45 185.3 131 75.6
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 8.7e-45 183.7 118 79.7
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 8.7e-45 183.7 118 79.7
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.1e-44 183.3 127 74.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 130 73.8
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.9e-44 182.6 118 78.8
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.3e-43 179.9 127 74.0
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.6e-43 179.5 130 73.1
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.6e-43 179.5 127 73.2
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 1.8e-42 176.0 127 73.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 5.3e-42 174.5 127 71.7
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 9.0e-42 173.7 147 64.6
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 4.5e-41 171.4 129 72.1
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 67.7
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 4.9e-40 167.9 129 71.3
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 4.9e-40 167.9 129 71.3
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 5.4e-39 164.5 127 66.1
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.9e-36 156.0 154 58.4
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 7.4e-36 154.1 127 65.4
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 62.2
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 2.1e-35 152.5 127 62.2
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 3.1e-34 148.7 90 82.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 3.4e-33 145.2 127 59.8
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 3.5e-30 135.2 88 81.8
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.1e-28 130.2 87 79.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 1.5e-28 129.8 133 54.9
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.3e-27 126.7 87 74.7
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.2e-25 120.2 87 71.3
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 9.7e-20 100.5 120 43.3
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.0e-16 90.5 121 42.1
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.2e-16 89.4 121 43.8
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.9e-16 89.0 61 75.4
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.0e-13 80.5 46 89.1
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 5.1e-13 78.2 40 90.0
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 5.7e-12 74.7 40 90.0
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 4.1e-10 68.6 49 75.5
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-08 63.2 31 90.3
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.4e-07 60.1 41 68.3


User provided reference genes

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