Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.3e-165 586.3 293 100.0
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 9.0e-154 547.0 284 97.2
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 3.4e-137 491.9 278 89.9
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 4.5e-121 438.3 228 95.2
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 1.3e-107 393.7 290 71.4
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 4.7e-102 375.2 295 67.1
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 2.5e-87 326.2 289 60.9
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 2.1e-86 323.2 290 59.7
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 2.1e-86 323.2 290 59.7
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 2.8e-86 322.8 292 59.2
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 2.0e-84 316.6 281 58.0
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 2.7e-81 306.2 287 56.8
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 2.1e-78 296.6 250 60.4
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 6.8e-77 291.6 246 63.4
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 1.5e-76 290.4 260 58.5
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 4.4e-76 288.9 284 54.6
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 9.8e-76 287.7 249 59.4
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 2.2e-75 286.6 278 56.1
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 2.2e-75 286.6 267 57.7
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 2.9e-75 286.2 226 63.7
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 6.4e-75 285.0 251 60.2
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 5.4e-74 282.0 269 56.1
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 1.2e-73 280.8 224 63.8
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 1.2e-73 280.8 275 54.9
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 2.1e-73 280.0 247 59.1
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 3.5e-73 279.3 224 63.4
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 3.5e-73 279.3 230 58.3
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 6.0e-73 278.5 251 57.8
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.3e-72 277.3 293 49.8
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 1.9e-71 273.5 236 57.2
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 4.3e-71 272.3 276 53.6
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 7.3e-71 271.6 247 56.7
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 1.2e-70 270.8 232 57.3
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 1.6e-70 270.4 223 61.9
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 1.6e-70 270.4 247 57.1
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 3.6e-70 269.2 245 56.3
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 4.0e-69 265.8 248 56.0
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 1.9e-66 256.9 240 53.8
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 2.4e-66 256.5 284 50.0
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 1.2e-65 254.2 246 52.0
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 2.7e-65 253.1 246 52.0
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 4.6e-65 252.3 240 52.9
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 2.3e-64 250.0 239 52.3
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 1.9e-63 246.9 240 52.5
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 7.3e-63 245.0 273 48.7
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 9.5e-63 244.6 242 52.1
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 9.5e-63 244.6 240 52.5
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 1.2e-62 244.2 280 49.6
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 2.1e-62 243.4 240 50.8
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 1.8e-61 240.4 232 53.0
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 1.3e-59 234.2 224 52.2
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 1.7e-59 233.8 293 46.1
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 2.9e-59 233.0 226 54.0
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 4.9e-59 232.3 248 53.6
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 8.4e-59 231.5 252 50.0
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 1.6e-57 227.3 251 51.4
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 2.3e-56 223.4 211 53.1
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 3.0e-56 223.0 120 97.5
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 3.0e-56 223.0 199 58.3
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 8.7e-56 221.5 282 42.9
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 3.3e-55 219.5 285 45.3
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 3.3e-55 219.5 247 47.4
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 1.3e-54 217.6 239 48.5
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.1e-54 216.9 179 62.6
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 2.8e-54 216.5 264 45.5
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 7.6e-52 208.4 244 46.3
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.9e-50 203.8 256 47.3
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 1.9e-47 193.7 181 55.2
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 9.6e-47 191.4 203 52.2
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 5.3e-45 185.7 180 52.2
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 2.5e-34 150.2 217 45.2
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 3.2e-34 149.8 221 39.4
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 1.9e-23 114.0 99 50.5
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 2.2e-22 110.5 99 51.5
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 1.2e-17 94.7 216 29.6
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 1.2e-17 94.7 216 29.6
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 4.6e-17 92.8 216 29.2
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 4.6e-17 92.8 216 29.6
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 6.1e-17 92.4 215 29.3
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 1.0e-16 91.7 216 28.7
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.0e-16 91.7 215 27.9
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 3.0e-16 90.1 217 28.1
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 1.5e-15 87.8 216 29.2
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 1.5e-15 87.8 216 29.2
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 4.8e-14 82.8 209 32.5
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 7.2e-10 68.9 218 26.6
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 2.0e-07 60.8 61 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 4.4e-07 59.7 206 24.3


User provided reference genes

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