Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g08450 Fragaria vesca HOM05D000112 ORTHO05D004941 1.2e-194 682.9 337 100.0
FAN14G4285 Fragaria x ananassa HOM05D000112 ORTHO05D004941 1.2e-194 682.9 337 100.0
FAN20G1035 Fragaria x ananassa HOM05D000112 ORTHO05D004941 1.2e-194 682.9 337 100.0
FAN11G3085 Fragaria x ananassa HOM05D000112 ORTHO05D004941 6.0e-194 680.6 337 99.7
RcHm_v2.0_Chr5g0009381 Rosa chinensis HOM05D000112 ORTHO05D004941 6.0e-178 627.5 338 92.6
FAN21G1531 Fragaria x ananassa HOM05D000112 ORTHO05D004941 1.6e-170 602.8 319 95.9
FAN16G2891 Fragaria x ananassa HOM05D000112 ORTHO05D004941 2.1e-170 602.4 319 96.2
FAN25G2784 Fragaria x ananassa HOM05D000112 ORTHO05D004941 1.9e-168 595.9 310 96.5
Prupe.4G053800 Prunus persica HOM05D000112 ORTHO05D004941 4.0e-129 465.3 346 70.2
MD05G1309400 Malus domestica HOM05D000112 ORTHO05D004941 3.2e-123 445.7 345 67.5
MD10G1287900 Malus domestica HOM05D000112 ORTHO05D004941 5.2e-121 438.3 346 66.2
Haze_06360 Corylus avellana HOM05D000112 ORTHO05D004941 8.9e-89 331.3 332 58.1
Cfa000538 Carpinus fangiana HOM05D000112 ORTHO05D004941 7.6e-88 328.2 333 57.7
QL05p043168 Quercus lobata HOM05D000112 ORTHO05D004941 4.6e-85 318.9 309 59.9
Dinv17365 Davidia involucrata HOM05D000112 ORTHO05D004941 1.2e-82 310.8 333 53.2
CANSAT35G1858 Cannabis sativa HOM05D000112 ORTHO05D004941 7.6e-80 301.6 339 54.3
Atru.chr10.1774 Acer truncatum HOM05D000112 ORTHO05D004941 1.1e-78 297.7 338 53.8
Ciclev10014391m.g Citrus clementina HOM05D000112 ORTHO05D004941 7.1e-78 295.0 332 53.6
CiPaw.10G053400 Carya illinoinensis HOM05D000112 ORTHO05D004941 1.4e-70 270.8 332 52.1
COL.COLO4_31402 Corchorus olitorius HOM05D000112 ORTHO05D004941 9.3e-70 268.1 334 49.4
Potri.011G059300 Populus trichocarpa HOM05D000112 ORTHO05D004941 1.2e-69 267.7 335 49.3
Potri.004G050150 Populus trichocarpa HOM05D000112 ORTHO05D004941 2.7e-69 266.5 333 49.8
Thecc.06G179800 Theobroma cacao HOM05D000112 ORTHO05D004941 1.1e-67 261.2 337 48.7
GSVIVG01021128001 Vitis vinifera HOM05D000112 ORTHO05D004941 4.3e-67 259.2 327 49.2
Sabra04G0031700 Salix brachista HOM05D000112 ORTHO05D004941 4.0e-65 252.7 368 45.9
Glyma.13G234200 Glycine max HOM05D000112 ORTHO05D004941 9.0e-65 251.5 337 47.2
Duzib160G0709 Durio zibethinus HOM05D000112 ORTHO05D004941 9.9e-64 248.1 333 45.9
Lalb_Chr15g0089651 Lupinus albus HOM05D000112 ORTHO05D004941 3.8e-63 246.1 336 48.2
Lj4g0023958 Lotus japonicus HOM05D000112 ORTHO05D004941 4.9e-63 245.7 341 46.6
Actinidia07609 Actinidia chinensis HOM05D000112 ORTHO05D004941 1.4e-62 244.2 333 46.5
Sabra11G0040900 Salix brachista HOM05D000112 ORTHO05D004941 1.9e-62 243.8 335 47.2
TWI38G0540 Tripterygium wilfordii HOM05D000112 ORTHO05D004941 1.9e-62 243.8 334 47.3
TWI38G0428 Tripterygium wilfordii HOM05D000112 ORTHO05D004941 3.2e-62 243.0 334 46.7
Actinidia39486 Actinidia chinensis HOM05D000112 ORTHO05D004941 2.1e-61 240.4 333 45.3
TAR629G2842 Trochodendron aralioides HOM05D000112 ORTHO05D004941 2.7e-61 240.0 344 46.2
Duzib192G0680 Durio zibethinus HOM05D000112 ORTHO05D004941 1.8e-60 237.3 334 46.4
VMungo0540G2118 Vigna mungo HOM05D000112 ORTHO05D004941 1.8e-60 237.3 333 45.6
Ca_18601_v3 Cicer arietinum L. HOM05D000112 ORTHO05D004941 3.0e-60 236.5 328 47.9
CiPaw.09G064500 Carya illinoinensis HOM05D000112 ORTHO05D004941 1.9e-59 233.8 304 50.7
TAR627G1123 Trochodendron aralioides HOM05D000112 ORTHO05D004941 3.3e-59 233.0 340 45.3
CsaV3_6G050480 Cucumis sativus L. HOM05D000112 ORTHO05D004941 7.4e-59 231.9 327 46.2
Gohir.D05G160900 Gossypium hirsutum HOM05D000112 ORTHO05D004941 7.4e-59 231.9 334 44.9
Gorai.009G166100 Gossypium raimondii HOM05D000112 ORTHO05D004941 7.4e-59 231.9 334 44.9
Lalb_Chr20g0121491 Lupinus albus HOM05D000112 ORTHO05D004941 9.6e-59 231.5 335 45.7
Glyma.15G078800 Glycine max HOM05D000112 ORTHO05D004941 1.6e-58 230.7 336 46.1
Phvul.006G181200 Phaseolus vulgaris HOM05D000112 ORTHO05D004941 1.6e-58 230.7 335 44.5
arahy.Tifrunner.gnm1.ann1.56MJ2J Arachis hypogaea HOM05D000112 ORTHO05D004941 8.1e-58 228.4 329 46.8
arahy.Tifrunner.gnm1.ann1.A1HLZR Arachis hypogaea HOM05D000112 ORTHO05D004941 1.8e-57 227.3 329 46.5
ClCG01G023350 Citrullus lanatus HOM05D000112 ORTHO05D004941 3.1e-57 226.5 330 45.8
Glyma.13G174000 Glycine max HOM05D000112 ORTHO05D004941 3.4e-56 223.0 336 45.2
Sed0006214 Sechium edule HOM05D000112 ORTHO05D004941 3.4e-56 223.0 334 45.8
MELO3C007251.2 Cucumis melo HOM05D000112 ORTHO05D004941 5.8e-56 222.2 326 44.5
Gohir.A05G158300 Gossypium hirsutum HOM05D000112 ORTHO05D004941 1.7e-55 220.7 330 45.5
Ca_00374_v3 Cicer arietinum L. HOM05D000112 ORTHO05D004941 4.9e-55 219.2 320 45.6
Glyma.07G202200 Glycine max HOM05D000112 ORTHO05D004941 1.1e-54 218.0 334 44.6
Phvul.003G290200 Phaseolus vulgaris HOM05D000112 ORTHO05D004941 1.9e-54 217.2 334 45.5
Sed0011628 Sechium edule HOM05D000112 ORTHO05D004941 1.9e-54 217.2 331 45.6
TPR.G11716 Trifolium pratense HOM05D000112 ORTHO05D004941 2.1e-53 213.8 288 47.2
Manes.17G050300 Manihot esculenta HOM05D000112 ORTHO05D004941 7.9e-53 211.8 334 42.5
arahy.Tifrunner.gnm1.ann1.024UA3 Arachis hypogaea HOM05D000112 ORTHO05D004941 2.3e-52 210.3 304 46.1
Medtr4g088210 Medicago truncatula HOM05D000112 ORTHO05D004941 6.7e-52 208.8 329 44.1
Cpa.g.sc7.3 Carica papaya HOM05D000112 ORTHO05D004941 2.5e-51 206.8 260 50.0
arahy.Tifrunner.gnm1.ann1.L6KZS8 Arachis hypogaea HOM05D000112 ORTHO05D004941 7.4e-51 205.3 316 44.9
Gorai.011G030900 Gossypium raimondii HOM05D000112 ORTHO05D004941 7.4e-51 205.3 314 44.3
Gohir.D10G029000 Gossypium hirsutum HOM05D000112 ORTHO05D004941 2.1e-50 203.8 314 44.3
Gohir.A10G028600 Gossypium hirsutum HOM05D000112 ORTHO05D004941 6.3e-50 202.2 314 43.3
TWI63G0434 Tripterygium wilfordii HOM05D000112 ORTHO05D004941 1.4e-49 201.1 388 39.2
Medtr2g014770 Medicago truncatula HOM05D000112 ORTHO05D004941 2.6e-48 196.8 285 45.6
Nn1g04271 Nelumbo nucifera HOM05D000112 ORTHO05D004941 2.6e-48 196.8 338 42.6
Gorai.010G157400 Gossypium raimondii HOM05D000112 ORTHO05D004941 3.4e-48 196.4 333 42.3
Psat1g202240 Pisum sativum HOM05D000112 ORTHO05D004941 3.4e-48 196.4 288 46.2
Lj1C1200T8 Lonicera japonica HOM05D000112 ORTHO05D004941 4.5e-48 196.1 319 42.0
Dinv40611 Davidia involucrata HOM05D000112 ORTHO05D004941 1.7e-47 194.1 325 40.0
Sopen02g022450 Solanum pennellii HOM05D000112 ORTHO05D004941 2.9e-47 193.4 329 38.3
Rhsim02G0135800 Rhododendron simsii HOM05D000112 ORTHO05D004941 1.1e-46 191.4 328 41.8
PGSC0003DMG400031769 Solanum tuberosum HOM05D000112 ORTHO05D004941 3.2e-46 189.9 329 38.6
Psat7g116760 Pisum sativum HOM05D000112 ORTHO05D004941 5.5e-46 189.1 330 42.4
DCAR_004039 Daucus carota HOM05D000112 ORTHO05D004941 9.3e-46 188.3 334 38.3
Solyc02g077560.3 Solanum lycopersicum HOM05D000112 ORTHO05D004941 1.2e-45 188.0 328 37.5
CAN.G79.95 Capsicum annuum HOM05D000112 ORTHO05D004941 6.7e-44 182.2 329 39.2
Eucgr.D00588 Eucalyptus grandis HOM05D000112 ORTHO05D004941 1.9e-43 180.6 327 40.1
vmacro15937 Vaccinium macrocarpon HOM05D000112 ORTHO05D004941 4.1e-41 172.9 329 40.4
MBI07_g38900_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D006442 5.3e-41 172.6 349 38.4
Aqoxy1G02260 Aquilegia oxysepala HOM05D000112 ORTHO05D004941 1.3e-39 167.9 337 38.3
PSO832G3342 Papaver somniferum HOM05D000112 ORTHO05D004941 1.4e-38 164.5 328 37.2
Nitab4.5_0006740g0010 Nicotiana tabacum HOM05D000112 ORTHO05D004941 4.2e-38 162.9 329 36.8
Oeu012163.4 Olea europaea HOM05D000112 ORTHO05D004941 4.2e-38 162.9 322 36.6
SHI19625 Sapria himalayana HOM05D000112 ORTHO05D004941 1.8e-36 157.5 337 38.9
Peaxi162Scf00099g00127 Petunia axillaris HOM05D000112 ORTHO05D004941 6.7e-36 155.6 326 32.5
PSO210G0504 Papaver somniferum HOM05D000112 ORTHO05D004941 5.7e-35 152.5 329 35.9
Oeu062321.1 Olea europaea HOM05D000112 ORTHO05D004941 6.9e-33 145.6 316 36.1
SalBow8G5546 Salvia bowleyana HOM05D000112 ORTHO05D004941 2.2e-31 140.6 336 34.8
PGR004G0657 Punica granatum HOM05D000112 ORTHO05D004941 5.0e-31 139.4 271 40.2
MBI06_g00807_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D004941 6.5e-31 139.0 336 34.5
CSS0020071 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D004941 7.2e-30 135.6 194 43.3
Ah.09g237680 Amaranthus hybridus HOM05D000112 ORTHO05D004941 2.7e-29 133.7 318 36.5
MSTRG.7367 Avicennia marina HOM05D000112 ORTHO05D004941 1.8e-28 131.0 332 33.4
Aqoxy4G00587 Aquilegia oxysepala HOM05D000112 ORTHO05D004941 1.1e-27 128.3 325 34.5
Cc02_g14070 Coffea canephora HOM05D000112 ORTHO05D004941 1.1e-27 128.3 326 33.4
EL10Ac8g20449 Beta vulgaris HOM05D000112 ORTHO05D004941 1.5e-27 127.9 304 36.8
PGR044G0954 Punica granatum HOM05D000112 ORTHO05D004941 1.5e-27 127.9 271 39.1
AUR62014884 Chenopodium quinoa HOM05D000112 ORTHO05D004941 2.6e-27 127.1 327 36.4
Sc05g0007430 Simmondsia chinensis HOM05D000112 ORTHO05D004941 9.7e-27 125.2 316 35.4
AUR62031093 Chenopodium quinoa HOM05D000112 ORTHO05D004941 1.3e-26 124.8 326 36.2
Potri.011G059101 Populus trichocarpa HOM05D000112 ORTHO05D004941 6.3e-26 122.5 165 44.8
CDE02G2973 Ceratophyllum demersum HOM05D000112 ORTHO05D004941 2.6e-24 117.1 300 35.0
CDE08G0872 Ceratophyllum demersum HOM05D000112 ORTHO05D004941 3.0e-20 103.6 327 30.6
DCAR_007988 Daucus carota HOM05D000112 ORTHO05D004941 5.2e-20 102.8 277 31.8
Migut.M01096 Erythranthe guttata HOM05D000112 ORTHO05D004941 2.6e-19 100.5 273 33.3
Gohir.D06G135400 Gossypium hirsutum HOM05D000112 ORTHO05D004941 6.3e-18 95.9 191 38.2
MBI07_g32541_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D004941 2.9e-15 87.0 233 35.6
Os05g0563400 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D004941 3.8e-15 86.7 298 30.9
MSTRG.13209 Avicennia marina HOM05D000112 ORTHO05D004941 9.4e-14 82.0 315 30.2
ATR0602G042 Amborella trichopoda HOM05D000112 ORTHO05D006442 2.7e-13 80.5 355 27.0
ECA234G2926 Erigeron canadensis HOM05D000112 ORTHO05D004941 1.0e-12 78.6 280 30.7
Ciclev10000976m.g Citrus clementina HOM05D000112 ORTHO05D004941 4.4e-11 73.2 137 34.3
Gorai.009G078800 Gossypium raimondii HOM05D000112 ORTHO05D006442 3.7e-10 70.1 110 44.5
Zm00001eb292830 Zea mays HOM05D000112 ORTHO05D004941 4.8e-10 69.7 281 29.2
THA.LOC104812619 Tarenaya hassleriana HOM05D000112 ORTHO05D004941 1.1e-09 68.6 274 28.8
Gohir.A05G074600 Gossypium hirsutum HOM05D000112 ORTHO05D006442 1.4e-09 68.2 110 44.5
Nn2g10724 Nelumbo nucifera HOM05D000112 ORTHO05D006442 1.4e-09 68.2 302 28.8
THA.LOC104814234 Tarenaya hassleriana HOM05D000112 ORTHO05D004941 3.1e-09 67.0 271 29.9
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 4.1e-09 66.6 64 54.7
CSS0031654 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D006442 7.0e-09 65.9 110 42.7
Os01g0670800 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D004941 7.0e-09 65.9 307 26.4
unitig_22.g6217 Utricularia gibba HOM05D000112 ORTHO05D004941 7.0e-09 65.9 224 30.8
HPP92_023875 Vanilla planifolia HOM05D000112 ORTHO05D000113 9.1e-09 65.5 324 25.0
Ciclev10027839m.g Citrus clementina HOM05D000112 ORTHO05D006442 1.2e-08 65.1 113 45.1
SGA_v2.0_scaffold309G48165 Striga asiatica HOM05D000112 ORTHO05D004941 2.7e-08 63.9 321 26.8
unitig_8.g3006 Utricularia gibba HOM05D000112 ORTHO05D004941 3.5e-08 63.5 151 34.4
CSS0046141 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D006442 4.5e-08 63.2 110 40.9
Manes.11G142300 Manihot esculenta HOM05D000112 ORTHO05D006442 7.7e-08 62.4 284 27.8
Thecc.09G258800 Theobroma cacao HOM05D000112 ORTHO05D006442 1.0e-07 62.0 111 41.4
Haze_23895 Corylus avellana HOM05D000112 ORTHO05D006442 1.3e-07 61.6 112 43.8
SEGI_40511 Sequoiadendron giganteum HOM05D000112 ORTHO05D011241 1.3e-07 61.6 330 25.8
CiPaw.13G108600 Carya illinoinensis HOM05D000112 ORTHO05D006442 2.9e-07 60.5 301 27.2
Duzib170G0134 Durio zibethinus HOM05D000112 ORTHO05D006442 3.8e-07 60.1 111 40.5
Atru.chr10.1776 Acer truncatum HOM05D000112 ORTHO05D052845 5.0e-07 59.7 63 52.4
ClCG02G021030 Citrullus lanatus HOM05D000112 ORTHO05D006442 5.0e-07 59.7 295 26.1
Duzib168G1534 Durio zibethinus HOM05D000112 ORTHO05D006442 5.0e-07 59.7 281 28.1
PSO339G3376 Papaver somniferum HOM05D000112 ORTHO05D006442 5.0e-07 59.7 293 28.3
QL01p023208 Quercus lobata HOM05D000112 ORTHO05D006442 5.0e-07 59.7 294 26.5
COL.COLO4_05184 Corchorus olitorius HOM05D000112 ORTHO05D006442 6.5e-07 59.3 111 39.6
MBI07_g01324_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D004941 6.5e-07 59.3 93 43.0
Atru.chr3.3675 Acer truncatum HOM05D000112 ORTHO05D006442 8.5e-07 58.9 305 28.2
HanXRQChr01g0014391 Helianthus annuus HOM05D000112 ORTHO05D004941 8.5e-07 58.9 256 29.3
PSO063G2463 Papaver somniferum HOM05D000112 ORTHO05D006442 8.5e-07 58.9 291 28.2
CANSAT54G2880 Cannabis sativa HOM05D000112 ORTHO05D006442 1.1e-06 58.5 303 29.4
Manes.04G024300 Manihot esculenta HOM05D000112 ORTHO05D006442 1.1e-06 58.5 280 27.1
HPP92_023845 Vanilla planifolia HOM05D000112 ORTHO05D004941 1.1e-06 58.5 124 34.7
AL4G29670 Arabidopsis lyrata HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
AT2G33860 Arabidopsis thaliana HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
Carub.0004s1557 Capsella rubella HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
CARHR128010 Cardamine hirsuta HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
Thhalv10016394m.g Eutrema salsugineum HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
Sp4g16280 Schrenkiella parvula HOM05D000112 ORTHO05D004941 1.9e-06 57.8 45 60.0
DCAR_015554 Daucus carota HOM05D000112 ORTHO05D006442 2.5e-06 57.4 111 39.6
MELO3C025758.2 Cucumis melo HOM05D000112 ORTHO05D006442 4.2e-06 56.6 295 26.1
Dinv32774 Davidia involucrata HOM05D000112 ORTHO05D006442 4.2e-06 56.6 307 27.4
Nn2g13036 Nelumbo nucifera HOM05D000112 ORTHO05D006442 7.2e-06 55.8 310 27.4
Nitab4.5_0000650g0030 Nicotiana tabacum HOM05D000112 ORTHO05D006442 7.2e-06 55.8 287 28.6
BcaB02g10601 Brassica carinata HOM05D000112 ORTHO05D004941 9.5e-06 55.5 45 55.6
Zm00001eb295830 Zea mays HOM05D000112 ORTHO05D004941 9.5e-06 55.5 183 30.6


User provided reference genes

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