Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1732 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.0e-48 194.9 100 100.0
FAN14G4235 Fragaria x ananassa HOM05D002542 ORTHO05D012505 3.0e-48 194.9 100 100.0
FAN21G0987 Fragaria x ananassa HOM05D002542 ORTHO05D012505 8.6e-48 193.4 100 99.0
FAN12G1957 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.6e-46 189.1 100 97.0
FAN09G1263 Fragaria x ananassa HOM05D002542 ORTHO05D012505 9.2e-42 173.3 127 76.4
FAN18G1778 Fragaria x ananassa HOM05D002542 ORTHO05D012505 9.9e-36 153.3 78 98.7
FAN15G0815 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.7e-35 152.5 100 85.0
FAN07G1065 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.4e-34 148.7 81 95.1
FAN28G1798 Fragaria x ananassa HOM05D002542 ORTHO05D012505 5.1e-32 141.0 124 68.5
FAN25G0160 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-30 135.6 68 100.0
FAN27G1131 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.8e-29 132.5 71 93.0
FAN19G2349 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.4e-29 132.1 68 98.5
FvH4_3g43310 Fragaria vesca HOM05D002542 ORTHO05D005078 1.3e-27 126.3 68 94.1
FAN11G0849 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.3e-27 126.3 68 94.1
FAN25G0516 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.7e-27 125.9 68 92.6
RcHm_v2.0_Chr5g0077371 Rosa chinensis HOM05D002542 ORTHO05D005078 2.9e-27 125.2 68 92.6
FAN16G1676 Fragaria x ananassa HOM05D002542 ORTHO05D005078 3.8e-27 124.8 68 92.6
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.4e-26 122.9 68 92.6
MD11G1027800 Malus domestica HOM05D002542 ORTHO05D005078 4.6e-25 117.9 68 86.8
FAN15G3150 Fragaria x ananassa HOM05D002542 ORTHO05D012505 7.8e-25 117.1 60 98.3
CANSAT56G4386 Cannabis sativa HOM05D002542 ORTHO05D005078 1.0e-24 116.7 68 85.3
Prupe.6G021800 Prunus persica HOM05D002542 ORTHO05D005078 1.0e-24 116.7 68 85.3
FvH4_2g07530 Fragaria vesca HOM05D002542 ORTHO05D012505 1.9e-23 112.5 68 85.3
ClCG02G023450 Citrullus lanatus HOM05D002542 ORTHO05D005078 3.6e-22 108.2 68 79.4
MELO3C014617.2 Cucumis melo HOM05D002542 ORTHO05D005078 3.1e-21 105.1 68 77.9
CsaV3_4G024050 Cucumis sativus L. HOM05D002542 ORTHO05D005078 3.1e-21 105.1 68 77.9
QL01p005723 Quercus lobata HOM05D002542 ORTHO05D005078 6.9e-21 104.0 72 70.8
Sed0011721 Sechium edule HOM05D002542 ORTHO05D005078 9.0e-21 103.6 68 75.0
FvH4_5g11310 Fragaria vesca HOM05D002542 ORTHO05D012505 1.2e-20 103.2 61 88.5
TAR623G0073 Trochodendron aralioides HOM05D002542 ORTHO05D005078 1.2e-20 103.2 68 72.1
TAR623G0292 Trochodendron aralioides HOM05D002542 ORTHO05D005078 3.4e-20 101.7 68 70.6
TAR636G0047 Trochodendron aralioides HOM05D002542 ORTHO05D005078 3.4e-20 101.7 68 72.1
Eucgr.J00798 Eucalyptus grandis HOM05D002542 ORTHO05D005078 4.5e-20 101.3 68 70.6
Aqoxy1G00203 Aquilegia oxysepala HOM05D002542 ORTHO05D005078 9.9e-20 100.1 68 70.6
Dinv08045 Davidia involucrata HOM05D002542 ORTHO05D005078 1.3e-19 99.8 68 73.5
Nn7g36091 Nelumbo nucifera HOM05D002542 ORTHO05D005078 1.7e-19 99.4 67 70.1
Oeu055810.1 Olea europaea HOM05D002542 ORTHO05D005078 1.7e-19 99.4 67 74.6
Oeu055812.1 Olea europaea HOM05D002542 ORTHO05D005078 1.7e-19 99.4 67 74.6
Nn2g15512 Nelumbo nucifera HOM05D002542 ORTHO05D005078 3.8e-19 98.2 68 70.6
TAR369G0468 Trochodendron aralioides HOM05D002542 ORTHO05D005078 3.8e-19 98.2 68 69.1
Actinidia16301 Actinidia chinensis HOM05D002542 ORTHO05D005078 6.4e-19 97.4 69 71.0
Dinv36293 Davidia involucrata HOM05D002542 ORTHO05D005078 6.4e-19 97.4 67 71.6
Hma1.2p1_0728F.1_g209330 Hydrangea macrophylla HOM05D002542 ORTHO05D005078 1.1e-18 96.7 72 66.7
MBI01_g36438_MAGBIO Magnolia biondii HOM05D002542 ORTHO05D005078 2.4e-18 95.5 65 72.3
PGR119G0847 Punica granatum HOM05D002542 ORTHO05D005078 2.4e-18 95.5 83 65.1
Peaxi162Scf00839g00235 Petunia axillaris HOM05D002542 ORTHO05D005078 3.2e-18 95.1 69 71.0
SalBow4G1692 Salvia bowleyana HOM05D002542 ORTHO05D005078 3.2e-18 95.1 67 73.1
SalBow4G1723 Salvia bowleyana HOM05D002542 ORTHO05D005078 3.2e-18 95.1 67 73.1
SGA_v2.0_scaffold3G01539 Striga asiatica HOM05D002542 ORTHO05D005078 3.2e-18 95.1 67 70.1
Atru.chr3.2552 Acer truncatum HOM05D002542 ORTHO05D005078 9.3e-18 93.6 74 64.9
MSTRG.17576 Avicennia marina HOM05D002542 ORTHO05D005078 9.3e-18 93.6 67 68.7
Thecc.09G226200 Theobroma cacao HOM05D002542 ORTHO05D005078 9.3e-18 93.6 74 66.2
arahy.Tifrunner.gnm1.ann1.SMM6ZV Arachis hypogaea HOM05D002542 ORTHO05D005078 1.2e-17 93.2 75 66.7
arahy.Tifrunner.gnm1.ann1.EPQ3BP Arachis hypogaea HOM05D002542 ORTHO05D005078 1.6e-17 92.8 75 66.7
Gohir.A09G115100 Gossypium hirsutum HOM05D002542 ORTHO05D005078 1.6e-17 92.8 70 64.3
Gohir.D09G111700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 1.6e-17 92.8 70 64.3
Gorai.006G129500 Gossypium raimondii HOM05D002542 ORTHO05D005078 1.6e-17 92.8 70 64.3
FAN01G1158 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-17 92.4 47 97.9
FAN22G1401 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-17 92.4 47 97.9
FAN27G1763 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.1e-17 92.4 47 97.9
Migut.N02300 Erythranthe guttata HOM05D002542 ORTHO05D005078 2.7e-17 92.0 67 64.2
Lalb_Chr14g0372211 Lupinus albus HOM05D002542 ORTHO05D005078 2.7e-17 92.0 101 52.5
VMungo1127G1966 Vigna mungo HOM05D002542 ORTHO05D005078 2.7e-17 92.0 72 68.1
Actinidia06880 Actinidia chinensis HOM05D002542 ORTHO05D005078 3.5e-17 91.7 69 66.7
Duzib168G0207 Durio zibethinus HOM05D002542 ORTHO05D005078 3.5e-17 91.7 70 65.7
Duzib170G1079 Durio zibethinus HOM05D002542 ORTHO05D005078 3.5e-17 91.7 70 64.3
Nitab4.5_0002278g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 3.5e-17 91.7 68 69.1
Ca_20579_v3 Cicer arietinum L. HOM05D002542 ORTHO05D005078 4.6e-17 91.3 72 68.1
Psat5g288320 Pisum sativum HOM05D002542 ORTHO05D005078 4.6e-17 91.3 72 63.9
COL.COLO4_24828 Corchorus olitorius HOM05D002542 ORTHO05D005078 6.0e-17 90.9 74 63.5
FAN20G2271 Fragaria x ananassa HOM05D002542 ORTHO05D012505 6.0e-17 90.9 47 95.7
Phvul.011G057300 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 6.0e-17 90.9 72 66.7
ECA233G4099 Erigeron canadensis HOM05D002542 ORTHO05D005078 7.9e-17 90.5 70 62.9
CSS0032394 Camellia sinensis var. sinensis HOM05D002542 ORTHO05D005078 1.0e-16 90.1 75 65.3
Duzib150G1060 Durio zibethinus HOM05D002542 ORTHO05D005078 1.0e-16 90.1 70 65.7
Lsat_1_v5_gn_6_48640 Lactuca sativa HOM05D002542 ORTHO05D005078 1.0e-16 90.1 67 64.2
Nitab4.5_0000175g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 1.0e-16 90.1 68 67.6
HanXRQChr13g0404001 Helianthus annuus HOM05D002542 ORTHO05D005078 1.3e-16 89.7 65 67.7
THA.LOC104799095 Tarenaya hassleriana HOM05D002542 ORTHO05D005078 1.8e-16 89.4 71 64.8
CiPaw.14G122700 Carya illinoinensis HOM05D002542 ORTHO05D005078 2.3e-16 89.0 78 57.7
Lj3g0023719 Lotus japonicus HOM05D002542 ORTHO05D005078 2.3e-16 89.0 72 66.7
Manes.06G167900 Manihot esculenta HOM05D002542 ORTHO05D005078 2.3e-16 89.0 81 55.6
Medtr2g098340 Medicago truncatula HOM05D002542 ORTHO05D005078 2.3e-16 89.0 72 63.9
Glyma.11G131000 Glycine max HOM05D002542 ORTHO05D005078 3.0e-16 88.6 72 65.3
Gohir.A07G125700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 3.0e-16 88.6 70 61.4
DCAR_002044 Daucus carota HOM05D002542 ORTHO05D005078 3.9e-16 88.2 67 67.2
Migut.D00566 Erythranthe guttata HOM05D002542 ORTHO05D005078 3.9e-16 88.2 70 65.7
Gohir.D07G129901 Gossypium hirsutum HOM05D002542 ORTHO05D005078 3.9e-16 88.2 70 60.0
Gorai.001G140400 Gossypium raimondii HOM05D002542 ORTHO05D005078 3.9e-16 88.2 70 60.0
Potri.001G017000 Populus trichocarpa HOM05D002542 ORTHO05D005078 3.9e-16 88.2 73 61.6
TPR.G13667 Trifolium pratense HOM05D002542 ORTHO05D005078 3.9e-16 88.2 71 64.8
AL6G46900 Arabidopsis lyrata HOM05D002542 ORTHO05D005078 5.1e-16 87.8 71 62.0
AT4G12070 Arabidopsis thaliana HOM05D002542 ORTHO05D005078 5.1e-16 87.8 71 62.0
CARHR254160 Cardamine hirsuta HOM05D002542 ORTHO05D005078 5.1e-16 87.8 71 62.0
Cfa009716 Carpinus fangiana HOM05D002542 ORTHO05D005078 5.1e-16 87.8 78 61.5
Glyma.12G055300 Glycine max HOM05D002542 ORTHO05D005078 5.1e-16 87.8 72 65.3
Medtr4g065980 Medicago truncatula HOM05D002542 ORTHO05D005078 5.1e-16 87.8 73 61.6
Solyc11g056620.3 Solanum lycopersicum HOM05D002542 ORTHO05D005078 5.1e-16 87.8 71 70.4
Sopen11g023360 Solanum pennellii HOM05D002542 ORTHO05D005078 5.1e-16 87.8 71 70.4
Carub.0006s3119 Capsella rubella HOM05D002542 ORTHO05D005078 8.7e-16 87.0 71 60.6
CiPaw.13G164700 Carya illinoinensis HOM05D002542 ORTHO05D005078 1.1e-15 86.7 78 59.0
Ciclev10015048m.g Citrus clementina HOM05D002542 ORTHO05D005078 1.1e-15 86.7 75 62.7
Cpa.g.sc84.91 Carica papaya HOM05D002542 ORTHO05D005078 1.5e-15 86.3 72 61.1
PSO339G0387 Papaver somniferum HOM05D002542 ORTHO05D005078 1.5e-15 86.3 70 60.0
PSO384G3896 Papaver somniferum HOM05D002542 ORTHO05D005078 1.5e-15 86.3 70 60.0
FAN11G1190 Fragaria x ananassa HOM05D002542 ORTHO05D012505 1.9e-15 85.9 45 95.6
Aa31LG9G10410 Aethionema arabicum HOM05D002542 ORTHO05D005078 2.5e-15 85.5 71 60.6
FAN28G1120 Fragaria x ananassa HOM05D002542 ORTHO05D012505 2.5e-15 85.5 47 91.5
TPR.G40863 Trifolium pratense HOM05D002542 ORTHO05D005078 3.3e-15 85.1 71 59.2
BcaB05g23771 Brassica carinata HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
BcaC03g16313 Brassica carinata HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
A02p25930 Brassica napus HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
C02p41260 Brassica napus HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
BolC2t10148H Brassica oleracea HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
BraA02t07588Z Brassica rapa HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
Lj3g0008300 Lotus japonicus HOM05D002542 ORTHO05D005078 4.3e-15 84.7 72 65.3
TWI32G0526 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 4.3e-15 84.7 71 60.6
Thhalv10028621m.g Eutrema salsugineum HOM05D002542 ORTHO05D005078 5.6e-15 84.3 71 59.2
Sp6g05430 Schrenkiella parvula HOM05D002542 ORTHO05D005078 5.6e-15 84.3 71 59.2
DCAR_029941 Daucus carota HOM05D002542 ORTHO05D005078 7.4e-15 84.0 67 59.7
Lj2A649G45 Lonicera japonica HOM05D002542 ORTHO05D005078 7.4e-15 84.0 67 64.2
Psat0s3083g0120 Pisum sativum HOM05D002542 ORTHO05D005078 7.4e-15 84.0 71 64.8
Phvul.L011143 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 9.6e-15 83.6 71 62.0
VMungo1080G0873 Vigna mungo HOM05D002542 ORTHO05D005078 1.3e-14 83.2 71 62.0
arahy.Tifrunner.gnm1.ann1.YJX7RI Arachis hypogaea HOM05D002542 ORTHO05D005078 1.6e-14 82.8 74 55.4
BcaC04g21201 Brassica carinata HOM05D002542 ORTHO05D005078 1.6e-14 82.8 71 57.7
C09p34380 Brassica napus HOM05D002542 ORTHO05D005078 1.6e-14 82.8 71 57.7
BolC9t56280H Brassica oleracea HOM05D002542 ORTHO05D005078 1.6e-14 82.8 71 57.7
BraA09t38276Z Brassica rapa HOM05D002542 ORTHO05D005078 1.6e-14 82.8 71 57.7
Sabra01G0011900 Salix brachista HOM05D002542 ORTHO05D005078 1.6e-14 82.8 73 58.9
Glyma.13G341900 Glycine max HOM05D002542 ORTHO05D005078 2.1e-14 82.4 71 62.0
Sabra03G0153100 Salix brachista HOM05D002542 ORTHO05D005078 2.1e-14 82.4 77 55.8
BcaB01g01717 Brassica carinata HOM05D002542 ORTHO05D005078 2.8e-14 82.0 71 56.3
Glyma.15G032400 Glycine max HOM05D002542 ORTHO05D005078 6.2e-14 80.9 71 59.2
Lalb_Chr03g0026231 Lupinus albus HOM05D002542 ORTHO05D005078 1.4e-13 79.7 71 62.0
Potri.003G207600 Populus trichocarpa HOM05D002542 ORTHO05D005078 1.4e-13 79.7 77 55.8
TWI34G0903 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 2.4e-13 79.0 71 59.2
A09p27050 Brassica napus HOM05D002542 ORTHO05D005078 4.0e-13 78.2 72 56.9
DCAR_023758 Daucus carota HOM05D002542 ORTHO05D005078 5.3e-13 77.8 69 60.9
CDE05G2289 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 9.0e-13 77.0 65 55.4
CDE05G1246 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 1.2e-12 76.6 65 55.4
EL10Ac4g10309 Beta vulgaris HOM05D002542 ORTHO05D005078 7.6e-12 73.9 71 54.9
SEGI_41426 Sequoiadendron giganteum HOM05D002542 ORTHO05D005078 7.6e-12 73.9 73 46.6
PGR102G1632 Punica granatum HOM05D002542 ORTHO05D005078 2.9e-11 72.0 66 51.5
unitig_699.g19127 Utricularia gibba HOM05D002542 ORTHO05D005078 3.8e-11 71.6 66 56.1
AUR62019257 Chenopodium quinoa HOM05D002542 ORTHO05D005078 6.5e-11 70.9 71 49.3
AUR62043684 Chenopodium quinoa HOM05D002542 ORTHO05D005078 6.5e-11 70.9 71 49.3
AUR62043579 Chenopodium quinoa HOM05D002542 ORTHO05D005078 8.4e-11 70.5 100 39.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.1e-10 70.1 54 57.4
AUR62000085 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.1e-10 70.1 71 50.7
Ah.06g193550 Amaranthus hybridus HOM05D002542 ORTHO05D005078 1.4e-10 69.7 71 50.7
QL08p037542 Quercus lobata HOM05D000328 ORTHO05D000191 2.1e-09 65.9 50 62.0
Rhsim13G0224600 Rhododendron simsii HOM05D002542 ORTHO05D005078 3.5e-09 65.1 69 56.5
ATR0605G168 Amborella trichopoda HOM05D002542 ORTHO05D005078 4.6e-09 64.7 67 46.3
vmacro04178 Vaccinium macrocarpon HOM05D002542 ORTHO05D005078 5.1e-08 61.2 69 55.1
Zm00001eb316700 Zea mays HOM05D002542 ORTHO05D005078 8.7e-08 60.5 75 42.7
Zm00001eb252800 Zea mays HOM05D002542 ORTHO05D005078 2.8e-06 55.5 73 42.5


User provided reference genes

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