Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 0.0e+00 1523.5 782 100.0
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 0.0e+00 1412.5 790 93.8
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 0.0e+00 1214.9 675 93.3
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 0.0e+00 1209.1 752 84.8
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-302 1042.7 611 88.1
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.8e-295 1018.5 815 68.6
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.6e-290 1001.5 808 68.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 7.2e-275 950.7 755 69.0
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 3.3e-243 845.5 848 57.7
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 9.5e-243 844.0 813 60.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.4e-241 840.1 805 60.6
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 5.1e-236 821.6 802 58.5
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.4e-233 813.5 808 57.7
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-229 800.4 805 56.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 2.3e-228 796.2 797 57.6
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 5.1e-228 795.0 803 56.8
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.9e-227 793.1 808 56.4
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 6.2e-226 788.1 804 57.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.0e-224 783.1 807 56.0
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.6e-224 782.7 807 56.1
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.8e-223 778.9 804 56.1
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.1e-222 777.3 809 57.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 4.2e-222 775.4 800 56.9
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.2e-221 773.9 800 56.2
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.0e-220 770.8 818 56.5
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 2.5e-219 766.1 760 57.5
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.4e-217 759.6 794 54.7
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 4.0e-217 758.8 803 55.5
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-216 757.3 804 55.6
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 6.4e-215 751.5 635 63.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.0e-212 744.2 706 58.8
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 5.1e-212 741.9 747 57.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.6e-212 741.5 818 53.7
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 6.2e-210 734.9 834 52.5
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 4.5e-208 728.8 805 54.3
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 1.3e-207 727.2 789 54.1
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.9e-206 723.4 718 55.8
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.6e-205 720.3 806 53.8
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.3e-204 717.2 807 54.2
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 2.3e-204 716.5 744 55.4
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 6.7e-204 714.9 806 53.5
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.3e-203 712.2 803 52.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 4.3e-203 712.2 797 54.5
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 5.6e-203 711.8 805 53.4
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 2.0e-200 703.4 816 52.0
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 5.8e-200 701.8 727 54.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 8.4e-199 698.0 787 51.8
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 8.7e-196 688.0 789 51.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 4.3e-195 685.6 649 58.1
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.4e-193 680.6 810 51.1
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 3.4e-192 676.0 818 49.8
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 3.4e-192 676.0 795 50.9
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 3.2e-190 669.5 795 50.7
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 5.5e-190 668.7 804 50.5
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.6e-189 667.2 808 49.1
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.3e-188 663.3 796 50.9
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 8.7e-188 661.4 814 49.5
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 2.5e-187 659.8 688 55.1
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.3e-186 657.5 804 50.2
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.6e-186 657.1 759 50.5
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 2.2e-186 656.8 808 49.5
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.8e-185 653.7 792 50.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.0e-184 650.2 856 48.4
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 7.7e-184 648.3 693 54.3
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 6.5e-183 645.2 698 53.0
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 9.4e-182 641.3 808 47.9
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 2.1e-181 640.2 808 48.4
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 3.0e-180 636.3 724 51.1
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.1e-179 634.4 816 48.9
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 2.0e-179 633.6 784 49.7
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 3.3e-179 632.9 803 49.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 9.7e-179 631.3 700 53.4
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 8.2e-178 628.2 807 48.3
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-177 627.9 700 51.9
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 3.1e-177 626.3 808 48.0
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.2e-176 624.4 818 48.9
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.6e-176 623.2 688 52.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 3.8e-175 619.4 811 48.1
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 8.5e-175 618.2 805 48.3
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 8.5e-175 618.2 767 49.2
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.2e-174 615.9 807 48.0
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.2e-173 614.4 807 48.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.5e-171 607.4 810 48.4
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 5.3e-169 599.0 863 46.6
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.7e-167 594.0 820 45.1
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.0e-167 592.4 764 47.3
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.3e-164 583.6 518 58.5
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 7.7e-160 568.5 818 45.2
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 3.0e-156 556.6 812 44.6
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 5.5e-150 535.8 808 43.4
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.4e-145 521.2 457 61.5
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 8.6e-143 511.9 729 45.0
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.5e-142 508.4 546 53.1
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-136 491.5 536 53.5
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 8.6e-127 458.8 750 43.3
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 3.7e-122 443.4 884 37.4
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 4.1e-121 439.9 675 43.4
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.2e-120 438.3 581 47.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.8e-116 424.5 632 43.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 2.8e-109 400.6 663 39.1
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 4.9e-106 389.8 768 38.0
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 3.2e-105 387.1 729 39.2
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.9e-97 361.3 450 47.1
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 4.5e-91 340.1 528 44.1
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 7.1e-73 279.6 415 43.9
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.2e-72 278.9 798 29.9
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 6.7e-63 246.5 746 30.7
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 6.5e-58 229.9 500 35.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 8.5e-58 229.6 358 42.5
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.8e-53 214.5 227 57.7
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 5.7e-38 163.7 237 42.6
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 4.1e-36 157.5 284 37.0
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 3.0e-31 141.4 206 50.5
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 6.8e-31 140.2 185 44.9
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.5e-30 139.0 244 43.9
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.4e-28 132.5 627 23.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-28 132.5 136 53.7
FAN02G1205 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.7e-26 125.6 78 88.5
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 3.3e-25 121.3 620 24.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-23 115.9 94 60.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-20 105.9 143 45.5
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 4.6e-19 100.9 108 53.7
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.3e-17 94.7 99 57.6
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.8e-14 84.0 113 48.7
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 9.8e-14 83.2 77 58.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.3e-13 82.8 131 41.2
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.7e-11 75.1 72 48.6
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.6e-10 70.5 152 37.5
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.1e-09 69.7 101 43.6
Cpa.g.sc70.72 Carica papaya HOM05D006071 ORTHO05D007462 1.4e-07 62.8 73 50.7
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 1.4e-07 62.8 123 27.6
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.9e-07 60.1 67 35.8
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.9e-07 60.1 66 36.4
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 1.2e-06 59.7 96 30.2
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 1.2e-06 59.7 66 37.9
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 1.2e-06 59.7 70 35.7
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 1.5e-06 59.3 73 32.9
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 1.5e-06 59.3 66 36.4
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 2.6e-06 58.5 104 29.8
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 2.6e-06 58.5 104 29.8
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 3.4e-06 58.2 64 37.5
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 9.8e-06 56.6 77 29.9
Lalb_Chr19g0134231 Lupinus albus HOM05D000463 ORTHO05D001294 9.8e-06 56.6 89 29.2
VMungo1080G0279 Vigna mungo HOM05D000463 ORTHO05D001294 9.8e-06 56.6 108 27.8
Zm00001eb075760 Zea mays HOM05D000463 ORTHO05D001294 9.8e-06 56.6 111 26.1


User provided reference genes

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