Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-98 362.5 178 100.0
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.3e-50 202.2 101 100.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 4.3e-50 201.8 101 99.0
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.6e-49 199.9 101 98.0
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.6e-49 199.9 101 98.0
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.6e-49 199.9 101 99.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.8e-49 199.1 101 97.0
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-49 199.1 101 97.0
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.1e-49 197.6 101 98.0
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-48 196.1 101 97.0
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-48 196.1 101 97.0
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 7.1e-45 184.5 99 90.9
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.4e-32 142.9 99 69.7
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.6e-31 139.4 99 67.7
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.0e-30 137.5 99 66.7
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.8e-27 126.7 66 93.9
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.1e-24 115.9 114 60.5
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 9.1e-24 114.4 96 64.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 7.2e-21 104.8 108 55.6
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.2e-20 104.0 102 52.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.2e-20 104.0 103 56.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.1e-20 103.2 103 55.3
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.1e-20 103.2 103 55.3
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.6e-20 102.4 105 57.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 4.7e-20 102.1 103 56.3
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.4e-19 100.5 102 52.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.4e-19 100.5 103 55.3
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.3e-19 99.8 100 56.0
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 6.7e-19 98.2 100 55.0
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 8.8e-19 97.8 103 54.4
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.1e-18 97.4 102 55.9
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 1.5e-18 97.1 104 55.8
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 2.0e-18 96.7 102 55.9
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.0e-18 96.7 104 51.9
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 2.6e-18 96.3 99 49.5
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 3.3e-18 95.9 103 53.4
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 4.4e-18 95.5 104 51.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 5.7e-18 95.1 100 56.0
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.7e-18 95.1 104 50.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 9.7e-18 94.4 99 52.5
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 9.7e-18 94.4 104 50.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.7e-17 93.6 99 52.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 2.2e-17 93.2 104 48.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.8e-17 92.8 104 50.0
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.8e-17 92.8 104 48.1
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 3.7e-17 92.4 100 50.0
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.8e-17 92.0 102 52.9
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.4e-16 89.7 101 50.5
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.4e-16 89.7 104 48.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 5.3e-16 88.6 102 47.1
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 5.3e-16 88.6 101 51.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 6.9e-16 88.2 104 46.2
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 6.9e-16 88.2 99 52.5
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.5e-15 87.0 100 49.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.6e-15 86.3 102 50.0
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 3.4e-15 85.9 105 47.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 4.5e-15 85.5 102 46.1
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 5.9e-15 85.1 101 49.5
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.7e-15 84.7 105 49.5
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 7.7e-15 84.7 105 49.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-14 84.3 103 47.6
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.0e-14 84.3 105 49.5
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.0e-14 84.3 105 49.5
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.2e-14 83.2 112 48.2
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.9e-14 82.8 105 49.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.8e-14 82.4 107 47.7
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 5.0e-14 82.0 104 51.0
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.5e-14 81.3 104 49.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 8.5e-14 81.3 101 46.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.1e-13 80.9 103 46.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.4e-13 80.5 67 58.2
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.2e-13 79.3 98 46.9
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 7.2e-13 78.2 72 55.6
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 9.4e-13 77.8 141 36.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 9.4e-13 77.8 99 45.5
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.2e-12 77.4 99 47.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.1e-12 76.6 63 60.3
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 4.7e-12 75.5 99 43.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 6.1e-12 75.1 100 44.0
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 6.1e-12 75.1 68 57.4
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 8.0e-12 74.7 84 51.2
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.0e-11 74.3 104 47.1
FAN05G3182 Fragaria x ananassa HOM05D005077 ORTHO05D203487 1.8e-11 73.6 70 57.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.3e-11 73.2 59 57.6
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.3e-11 73.2 101 41.6
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 3.0e-11 72.8 101 44.6
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 3.9e-11 72.4 110 45.5
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.9e-11 72.4 101 41.6
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.9e-11 72.4 75 52.0
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 5.2e-11 72.0 101 41.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.5e-10 70.5 104 44.2
FAN14G1862 Fragaria x ananassa HOM05D058902 ORTHO05D006847 1.5e-10 70.5 104 46.2
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.6e-10 69.7 72 55.6
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 9.7e-10 67.8 102 41.2
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 9.7e-10 67.8 81 42.0
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.3e-09 67.4 58 51.7
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.3e-09 67.4 97 43.3
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.7e-09 67.0 85 45.9
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.7e-09 65.9 104 42.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.7e-09 65.9 104 42.3
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.1e-08 64.3 82 46.3
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.8e-08 63.5 59 52.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.4e-08 63.2 50 60.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.4e-08 63.2 103 39.8
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 7.0e-08 61.6 88 38.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 7.0e-08 61.6 71 45.1
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.0e-07 60.1 59 49.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 4.5e-07 58.9 87 42.5
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 7.7e-07 58.2 38 63.2
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-06 57.0 72 40.3
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.7e-06 57.0 99 42.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.9e-06 56.2 59 47.5
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.9e-06 56.2 59 47.5
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.8e-06 55.8 28 92.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.8e-06 55.8 98 38.8
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 3.8e-06 55.8 64 46.9
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.0e-06 55.5 59 45.8
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 6.5e-06 55.1 56 50.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 6.5e-06 55.1 50 52.0


User provided reference genes

Program Settings