Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.3e-62 241.1 120 100.0
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-33 146.4 117 67.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 8.2e-29 130.6 65 93.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.2e-29 130.6 63 95.2
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.1e-28 128.6 62 95.2
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.1e-28 128.6 62 95.2
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.1e-28 128.6 62 95.2
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.1e-28 128.3 63 93.7
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-27 126.3 62 93.5
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 3.5e-27 125.2 64 90.6
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.3e-26 123.2 61 91.8
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-21 106.7 53 94.3
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.8e-21 105.5 61 77.0
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 4.8e-21 104.8 61 75.4
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 4.8e-21 104.8 53 92.5
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 8.3e-21 104.0 61 73.8
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.1e-20 103.6 61 73.8
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.8e-20 102.8 61 75.4
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 2.4e-20 102.4 61 73.8
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 2.4e-20 102.4 61 73.8
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.4e-20 102.4 61 73.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 2.4e-20 102.4 106 50.9
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 3.1e-20 102.1 61 72.1
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 3.1e-20 102.1 61 72.1
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.1e-20 101.7 53 90.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 9.1e-20 100.5 61 72.1
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.2e-19 100.1 61 72.1
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 1.2e-19 100.1 61 72.1
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.2e-19 100.1 61 72.1
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 1.2e-19 100.1 61 68.9
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 2.0e-19 99.4 61 70.5
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.5e-19 98.6 61 70.5
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 3.5e-19 98.6 61 72.1
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 4.5e-19 98.2 104 50.0
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 4.5e-19 98.2 61 72.1
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 7.7e-19 97.4 61 70.5
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 7.7e-19 97.4 62 67.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.0e-18 97.1 61 72.1
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.0e-18 97.1 62 66.1
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.0e-18 97.1 61 68.9
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.0e-18 97.1 62 66.1
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 1.3e-18 96.7 61 72.1
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.3e-18 96.7 63 68.3
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.3e-18 96.7 63 68.3
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.3e-18 96.7 63 68.3
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 1.3e-18 96.7 61 65.6
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.7e-18 96.3 61 67.2
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.7e-18 96.3 63 66.7
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 2.2e-18 95.9 63 68.3
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 2.2e-18 95.9 78 56.4
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 2.9e-18 95.5 61 68.9
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 2.9e-18 95.5 61 67.2
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 5.0e-18 94.7 63 63.5
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 5.0e-18 94.7 55 78.2
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 6.5e-18 94.4 61 68.9
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.5e-17 93.2 63 61.9
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.5e-17 93.2 61 65.6
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.5e-17 93.2 61 65.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 1.9e-17 92.8 80 55.0
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 1.9e-17 92.8 113 46.9
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 2.5e-17 92.4 61 65.6
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 3.2e-17 92.0 98 45.9
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 4.2e-17 91.7 61 67.2
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 7.2e-17 90.9 61 63.9
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 7.2e-17 90.9 63 63.5
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 7.2e-17 90.9 61 65.6
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 7.2e-17 90.9 61 67.2
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 9.4e-17 90.5 56 73.2
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.2e-16 90.1 57 68.4
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.2e-16 90.1 61 65.6
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.2e-16 90.1 61 65.6
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 1.2e-16 90.1 61 65.6
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.6e-16 89.7 61 63.9
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 2.1e-16 89.4 101 44.6
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.1e-16 89.4 61 63.9
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.7e-16 89.0 61 67.2
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 2.7e-16 89.0 63 58.7
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 4.7e-16 88.2 63 57.1
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 6.1e-16 87.8 58 62.1
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.4e-15 86.7 61 60.7
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 1.8e-15 86.3 61 60.7
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 2.3e-15 85.9 61 63.9
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 3.0e-15 85.5 61 60.7
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 5.2e-15 84.7 61 62.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.2e-14 83.6 63 57.1
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.5e-14 83.2 61 59.0
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.5e-14 83.2 61 60.7
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 2.0e-14 82.8 61 60.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.6e-14 82.4 61 59.0
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 3.4e-14 82.0 61 59.0
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 5.7e-14 81.3 61 57.4
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 3.7e-13 78.6 56 62.5
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 4.8e-13 78.2 62 61.3
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 6.3e-13 77.8 56 60.7
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.4e-12 76.6 55 58.2
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.4e-12 76.6 55 58.2
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.4e-12 75.9 62 59.7
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 2.4e-12 75.9 62 59.7
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 7.0e-12 74.3 62 58.1
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 7.0e-12 74.3 62 58.1
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.1e-12 73.9 62 58.1
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.6e-11 73.2 63 50.8
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 2.0e-11 72.8 56 55.4
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 3.5e-11 72.0 34 91.2
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.5e-11 72.0 37 91.9
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.5e-11 71.6 53 64.2
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.3e-10 70.1 64 50.0
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 2.3e-10 69.3 55 56.4
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.9e-10 68.9 53 52.8
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 6.6e-10 67.8 52 55.8
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 8.6e-10 67.4 37 78.4
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.2e-09 65.1 60 40.0
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 9.8e-06 53.9 57 49.1


User provided reference genes

Program Settings