Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4123 Fragaria x ananassa HOM05D000439 ORTHO05D029471 1.7e-64 249.6 171 100.0
FvH4_6g32540 Fragaria vesca HOM05D000439 ORTHO05D029471 8.4e-35 151.0 80 92.5
FvH4_4g09570 Fragaria vesca HOM05D000439 ORTHO05D029471 9.9e-28 127.5 95 70.5
FAN27G0407 Fragaria x ananassa HOM05D000439 ORTHO05D029471 1.4e-21 107.1 73 78.1
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 9.3e-18 94.4 72 66.7
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.2e-17 94.0 72 66.7
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.2e-17 94.0 72 66.7
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.2e-17 94.0 72 66.7
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 3.5e-17 92.4 72 65.3
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 1.0e-16 90.9 72 63.9
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 1.8e-16 90.1 72 63.9
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 6.7e-16 88.2 72 62.5
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 8.7e-16 87.8 72 62.5
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 8.7e-16 87.8 72 63.9
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 1.5e-15 87.0 72 62.5
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 1.5e-15 87.0 72 63.9
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 1.5e-15 87.0 72 63.9
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 2.5e-15 86.3 72 61.1
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 3.3e-15 85.9 92 51.1
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 4.3e-15 85.5 72 59.7
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 5.7e-15 85.1 72 58.3
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 9.6e-15 84.3 72 62.5
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 2.1e-14 83.2 72 58.3
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 4.8e-14 82.0 72 59.7
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 6.2e-14 81.6 73 58.9
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 8.2e-14 81.3 73 58.9
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 8.2e-14 81.3 72 56.9
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 1.4e-13 80.5 72 56.9
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 2.4e-13 79.7 72 56.9
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.4e-13 79.7 73 58.9
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.4e-13 79.7 73 58.9
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.4e-13 79.7 73 58.9
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 3.1e-13 79.3 70 54.3
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 3.1e-13 79.3 76 57.9
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 4.1e-13 79.0 72 58.3
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 4.1e-13 79.0 72 54.2
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 5.3e-13 78.6 74 58.1
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 6.9e-13 78.2 72 54.2
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 6.9e-13 78.2 72 58.3
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 9.0e-13 77.8 72 54.2
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 9.0e-13 77.8 70 58.6
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 9.0e-13 77.8 70 58.6
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 1.2e-12 77.4 74 56.8
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 1.2e-12 77.4 74 58.1
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 1.2e-12 77.4 72 58.3
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 1.2e-12 77.4 72 54.2
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 1.2e-12 77.4 74 58.1
VMungo0720G0964 Vigna mungo HOM05D000439 ORTHO05D006172 1.2e-12 77.4 72 58.3
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 1.5e-12 77.0 74 56.8
Glyma.10G248000 Glycine max HOM05D000439 ORTHO05D006172 1.5e-12 77.0 72 56.9
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 2.0e-12 76.6 68 61.8
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 2.0e-12 76.6 72 51.4
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 2.0e-12 76.6 72 51.4
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 2.6e-12 76.3 72 56.9
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 3.4e-12 75.9 70 54.3
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 4.5e-12 75.5 72 54.2
Gohir.D02G038900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 5.8e-12 75.1 72 54.2
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 5.8e-12 75.1 72 54.2
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 5.8e-12 75.1 70 50.0
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 5.8e-12 75.1 72 50.0
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 5.8e-12 75.1 72 51.4
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 5.8e-12 75.1 72 51.4
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 7.6e-12 74.7 70 52.9
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.0e-11 74.3 72 50.0
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 1.7e-11 73.6 72 52.8
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 2.2e-11 73.2 70 51.4
Lalb_Chr21g0304711 Lupinus albus HOM05D000439 ORTHO05D006172 2.2e-11 73.2 72 54.2
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 2.2e-11 73.2 62 56.5
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 2.2e-11 73.2 72 55.6
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 3.8e-11 72.4 72 54.2
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 3.8e-11 72.4 72 51.4
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 5.0e-11 72.0 58 62.1
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 5.0e-11 72.0 72 52.8
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 5.0e-11 72.0 79 53.2
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 6.5e-11 71.6 92 40.2
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 8.4e-11 71.2 64 56.2
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 1.1e-10 70.9 72 50.0
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 1.1e-10 70.9 72 51.4
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.4e-10 70.5 72 50.0
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 1.4e-10 70.5 74 54.1
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 1.4e-10 70.5 74 54.1
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 1.4e-10 70.5 74 54.1
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 1.4e-10 70.5 72 52.8
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 1.9e-10 70.1 72 50.0
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 2.5e-10 69.7 72 54.2
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 4.2e-10 68.9 72 50.0
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 4.2e-10 68.9 81 48.1
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 5.5e-10 68.6 72 48.6
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 5.5e-10 68.6 80 47.5
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 5.5e-10 68.6 72 50.0
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 5.5e-10 68.6 79 49.4
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 7.1e-10 68.2 72 50.0
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 9.3e-10 67.8 68 50.0
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 9.3e-10 67.8 72 48.6
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 1.2e-09 67.4 80 46.2
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 2.1e-09 66.6 72 51.4
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 2.1e-09 66.6 70 48.6
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.7e-09 66.2 59 57.6
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 2.7e-09 66.2 75 48.0
ECA240G1500 Erigeron canadensis HOM05D000439 ORTHO05D006172 3.5e-09 65.9 56 60.7
ECA240G1807 Erigeron canadensis HOM05D000439 ORTHO05D006172 3.5e-09 65.9 56 60.7
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 7.9e-09 64.7 79 46.8
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 7.9e-09 64.7 72 50.0
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 7.9e-09 64.7 76 47.4
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 7.9e-09 64.7 58 60.3
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 7.9e-09 64.7 71 49.3
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 7.9e-09 64.7 71 49.3
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 7.9e-09 64.7 72 48.6
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 1.8e-08 63.5 72 50.0
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 1.8e-08 63.5 68 51.5
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 2.3e-08 63.2 72 48.6
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.3e-08 63.2 72 48.6
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.3e-08 63.2 72 48.6
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 3.0e-08 62.8 72 47.2
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 3.0e-08 62.8 74 50.0
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-07 60.8 50 64.0
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 1.5e-07 60.5 56 53.6
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 1.5e-07 60.5 56 53.6
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 1.5e-07 60.5 56 53.6
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 1.3e-06 57.4 69 46.4
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 1.6e-06 57.0 72 47.2


User provided reference genes

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