Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.2e-162 574.3 287 100.0
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.2e-162 574.3 287 100.0
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.9e-157 558.5 287 97.6
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.7e-155 552.0 287 96.5
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.3e-144 516.5 299 89.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 1.5e-124 449.9 292 81.2
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 1.2e-123 446.8 291 80.8
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 9.5e-116 420.6 297 73.7
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 4.4e-113 411.8 296 73.3
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 7.5e-113 411.0 300 71.7
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 3.2e-111 405.6 296 70.6
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 5.4e-111 404.8 291 72.2
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.2e-110 403.7 324 67.6
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.6e-110 403.3 297 71.4
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 4.6e-110 401.7 288 72.6
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 7.8e-110 401.0 291 71.5
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 5.6e-108 394.8 207 96.6
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 3.6e-107 392.1 296 70.3
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 4.7e-107 391.7 296 69.6
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 4.7e-107 391.7 305 67.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 8.9e-106 387.5 283 70.7
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.5e-105 386.7 300 70.3
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 2.0e-105 386.3 297 67.7
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 3.4e-105 385.6 296 69.3
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 9.9e-105 384.0 286 69.2
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 2.9e-104 382.5 298 68.5
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 6.4e-104 381.3 248 77.0
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 8.4e-104 380.9 289 69.2
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.4e-103 380.2 303 68.3
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.9e-103 379.8 294 69.4
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 2.4e-103 379.4 298 67.4
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.2e-102 377.1 296 67.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.2e-102 377.1 295 69.2
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.6e-102 376.7 285 69.1
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 3.5e-102 375.6 286 68.5
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 3.5e-102 375.6 299 68.2
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.8e-102 374.4 295 65.1
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 7.8e-102 374.4 296 66.9
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 7.8e-102 374.4 304 66.4
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.3e-101 373.6 234 78.6
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.9e-101 372.1 305 65.2
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 5.1e-101 371.7 290 68.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 5.1e-101 371.7 289 68.2
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.1e-100 370.5 288 68.4
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.5e-100 370.2 285 68.4
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.9e-100 369.8 299 66.2
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.3e-100 369.0 299 66.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 5.6e-100 368.2 295 65.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.1e-99 366.3 287 67.9
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.1e-99 366.3 212 80.7
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.6e-99 365.5 282 67.0
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 4.7e-99 365.2 287 67.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.4e-98 363.6 302 65.2
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.4e-98 362.8 294 66.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 3.1e-98 362.5 287 67.9
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 4.0e-98 362.1 296 66.6
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 6.9e-98 361.3 295 66.4
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 6.9e-98 361.3 233 75.1
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.2e-97 360.5 284 65.8
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.0e-97 359.8 291 65.3
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.4e-97 359.0 288 67.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.4e-97 359.0 288 67.4
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 4.4e-97 358.6 303 64.0
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 9.9e-97 357.5 306 65.0
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 9.9e-97 357.5 306 65.0
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.3e-96 357.1 277 67.5
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.9e-96 355.9 302 62.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 2.9e-96 355.9 261 69.7
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 6.4e-96 354.8 286 67.8
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 8.4e-96 354.4 232 74.6
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-95 353.2 284 63.4
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 2.4e-95 352.8 263 66.5
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.2e-95 352.4 282 63.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 7.1e-95 351.3 283 67.5
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.2e-94 350.5 288 65.3
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 3.5e-94 349.0 276 67.0
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.3e-93 347.1 218 76.1
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.9e-92 343.2 230 72.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.9e-92 343.2 220 75.5
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.5e-92 342.8 217 76.0
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 9.6e-92 340.9 311 61.7
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.3e-91 340.5 225 76.0
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 2.1e-91 339.7 285 62.5
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 4.8e-91 338.6 262 66.4
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.2e-91 338.2 193 82.9
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.1e-90 337.4 316 61.1
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.8e-88 328.9 257 63.8
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 3.2e-87 325.9 235 66.4
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 7.1e-87 324.7 220 68.2
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.2e-86 323.9 233 71.2
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 7.9e-86 321.2 289 59.5
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.6e-75 287.0 236 64.8
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 6.2e-75 285.0 219 58.4
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.0e-69 267.7 212 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 5.7e-68 261.9 223 55.6
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 7.7e-65 251.5 216 58.8
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 9.4e-63 244.6 215 61.9
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.0e-61 241.1 145 78.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 2.8e-59 233.0 166 69.3
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 6.3e-59 231.9 211 60.7
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.4e-55 220.7 216 50.5
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.7e-54 216.5 150 73.3
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 3.6e-54 216.1 213 48.4
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 6.1e-54 215.3 191 52.4
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 5.1e-53 212.2 156 69.2
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.6e-46 190.7 132 71.2
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.7e-46 189.9 163 64.4
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.6e-41 174.1 120 70.8
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 7.7e-41 171.8 107 73.8
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 5.3e-34 149.1 86 79.1
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.9e-32 143.3 72 91.7
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.9e-32 143.3 72 91.7
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 4.8e-27 125.9 148 53.4
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.8e-18 97.4 117 50.4
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 3.2e-18 96.7 233 30.0
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 2.3e-13 80.5 49 83.7
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 8.9e-13 78.6 50 78.0
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.2e-11 73.9 80 55.0
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.2e-11 73.9 80 55.0
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 5.4e-10 69.3 67 58.2
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.6e-09 67.8 42 73.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.6e-09 67.8 203 25.6
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.7e-09 67.0 221 23.1
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.7e-09 67.0 208 25.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.7e-09 67.0 143 26.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.5e-09 66.6 212 24.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.0e-08 62.8 213 25.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.6e-08 62.0 168 25.6
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.1e-07 61.6 168 25.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.5e-07 61.2 203 24.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.9e-07 60.8 217 24.0
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.9e-07 60.8 218 21.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.3e-07 60.1 221 24.4
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.3e-07 60.1 169 27.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 7.3e-07 58.9 202 22.3
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.2e-06 58.2 40 62.5
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.1e-06 57.4 220 20.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.8e-06 57.0 168 23.8
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 4.7e-06 56.2 185 21.6


User provided reference genes

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