Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-44 180.6 89 100.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-42 174.1 89 98.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.2e-42 173.3 89 96.6
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-36 154.8 118 71.2
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.2e-31 138.7 89 78.7
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-21 105.5 80 60.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-21 105.5 80 60.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-21 103.6 80 58.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-19 99.8 83 56.6
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-19 99.0 86 53.5
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-18 95.9 116 42.2
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 6.3e-18 94.0 91 53.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.4e-17 92.8 88 53.4
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.8e-17 92.4 83 53.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 5.4e-17 90.9 85 51.8
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 9.1e-17 90.1 84 58.3
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.7e-16 88.6 92 48.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-16 88.2 83 51.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-16 88.2 83 51.8
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.5e-16 87.8 90 46.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.9e-16 87.4 83 53.0
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-16 87.0 59 61.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 7.7e-16 87.0 91 54.9
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.3e-15 85.5 83 48.2
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.6e-15 84.0 89 49.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.1e-14 83.2 90 43.3
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.1e-14 83.2 90 44.4
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.1e-14 83.2 90 44.4
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-14 83.2 92 53.3
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.3e-14 81.6 82 46.3
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.2e-14 80.5 88 47.7
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 7.2e-14 80.5 67 53.7
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 7.2e-14 80.5 83 50.6
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.2e-14 80.5 83 51.8
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 7.2e-14 80.5 83 49.4
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 9.5e-14 80.1 87 46.0
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 9.5e-14 80.1 82 47.6
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-13 79.7 92 45.7
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.2e-13 79.7 92 45.7
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.2e-13 79.7 81 46.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-13 79.3 80 46.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.1e-13 79.0 83 50.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.1e-13 79.0 78 46.2
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-13 78.6 84 46.4
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.8e-13 78.6 92 43.5
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.6e-13 78.2 83 49.4
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.6e-13 78.2 80 45.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 4.7e-13 77.8 87 47.1
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 4.7e-13 77.8 87 47.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-13 77.8 88 53.4
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.7e-13 77.8 85 48.2
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 4.7e-13 77.8 83 45.8
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.7e-13 77.8 85 42.4
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 6.1e-13 77.4 83 47.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 6.1e-13 77.4 83 48.2
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.0e-12 76.6 92 45.7
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.0e-12 76.6 79 46.8
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-12 76.6 86 47.7
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-12 76.3 80 52.5
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-12 75.9 88 45.5
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-12 75.9 88 48.9
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-12 75.9 75 48.0
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.3e-12 75.5 85 45.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 3.0e-12 75.1 84 46.4
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.0e-12 75.1 82 47.6
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.0e-12 74.7 82 40.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.0e-12 74.7 81 45.7
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 4.0e-12 74.7 81 45.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.0e-12 74.7 65 49.2
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-12 74.3 81 45.7
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.2e-12 74.3 81 45.7
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 5.2e-12 74.3 51 60.8
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 6.8e-12 73.9 86 44.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-12 73.9 86 44.2
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-12 73.9 81 40.7
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 6.8e-12 73.9 88 45.5
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 8.9e-12 73.6 78 44.9
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.5e-11 72.8 83 45.8
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-11 72.8 83 43.4
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.0e-11 72.4 82 39.0
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.6e-11 72.0 79 43.0
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-11 71.6 84 41.7
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.4e-11 71.6 84 41.7
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-11 71.6 86 39.5
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.4e-11 71.6 81 42.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 4.4e-11 71.2 89 46.1
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 4.4e-11 71.2 85 41.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.4e-11 71.2 81 42.0
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.5e-11 70.5 88 43.2
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 7.5e-11 70.5 83 43.4
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 9.8e-11 70.1 84 40.5
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.3e-10 69.7 91 42.9
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-10 69.7 54 55.6
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.7e-10 69.3 90 43.3
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-10 69.3 79 45.6
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-10 69.3 79 45.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-10 69.3 86 38.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 2.2e-10 68.9 82 42.7
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.8e-10 68.6 61 49.2
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-10 68.6 82 41.5
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.8e-10 68.6 82 46.3
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.8e-10 68.6 72 44.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 3.7e-10 68.2 89 41.6
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.7e-10 68.2 80 42.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.7e-10 68.2 76 44.7
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.7e-10 68.2 80 45.0
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.7e-10 68.2 80 38.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-10 67.8 78 42.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.9e-10 67.8 85 41.2
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.9e-10 67.8 89 40.4
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 4.9e-10 67.8 87 35.6
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 6.3e-10 67.4 79 39.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-10 67.4 90 40.0
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.3e-10 67.4 81 45.7
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 8.3e-10 67.0 90 37.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.3e-10 67.0 84 44.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-09 66.6 46 58.7
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.1e-09 66.6 83 42.2
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.1e-09 66.6 80 43.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.4e-09 66.2 53 50.9
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-09 66.2 80 38.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.4e-09 66.2 81 42.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-09 66.2 49 53.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 82 40.2
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.8e-09 65.9 52 51.9
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-09 65.5 54 48.1
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.4e-09 65.5 80 37.5
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.4e-09 65.5 50 52.0
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 3.1e-09 65.1 80 41.2
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 5.4e-09 64.3 87 41.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 5.4e-09 64.3 87 41.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.4e-09 64.3 81 37.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 7.0e-09 63.9 80 37.5
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.0e-09 63.9 80 37.5
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 7.0e-09 63.9 91 35.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 9.2e-09 63.5 72 40.3
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-09 63.5 89 48.3
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 9.2e-09 63.5 50 52.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 9.2e-09 63.5 50 52.0
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-08 63.2 89 48.3
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-08 63.2 83 34.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-08 63.2 83 34.9
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-08 63.2 83 42.2
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-08 62.8 54 46.3
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-08 62.8 50 48.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.6e-08 62.8 89 31.5
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.6e-08 62.8 79 41.8
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.6e-08 62.8 80 40.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-08 62.4 87 40.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-08 62.4 89 40.4
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 2.7e-08 62.0 48 50.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.7e-08 62.0 87 40.2
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.5e-08 61.6 86 36.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 3.5e-08 61.6 78 38.5
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.5e-08 61.2 85 38.8
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 4.5e-08 61.2 78 38.5
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 5.9e-08 60.8 89 40.4
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 5.9e-08 60.8 78 38.5
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.8e-08 60.5 69 37.7
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 7.8e-08 60.5 81 39.5
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-07 60.1 84 32.1
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.0e-07 60.1 82 37.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.3e-07 59.7 87 35.6
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-07 59.7 79 39.2
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.3e-07 59.7 96 33.3
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-07 59.3 88 37.5
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-07 59.3 88 37.5
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.7e-07 59.3 43 53.5
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.3e-07 58.9 52 44.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-07 57.4 79 32.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-07 57.4 79 31.6
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 6.6e-07 57.4 83 33.7
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.5e-06 56.2 81 37.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.9e-06 55.8 78 33.3
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-06 55.8 48 45.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-06 55.8 48 45.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 3.3e-06 55.1 51 45.1
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 7.3e-06 53.9 80 36.2
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 7.3e-06 53.9 81 35.8
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.3e-06 53.9 43 51.2


User provided reference genes

Program Settings