Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.1e-78 296.6 148 100.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.1e-78 296.6 148 100.0
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.9e-77 290.8 148 97.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.9e-76 288.5 148 97.3
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 7.4e-72 273.9 148 92.6
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.5e-64 249.6 148 83.8
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.3e-63 246.5 148 83.8
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.8e-62 242.7 148 82.4
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.5e-59 233.0 126 88.9
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.3e-55 219.9 149 76.5
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.0e-53 212.6 149 73.2
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 5.9e-53 211.1 171 67.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 6.5e-52 207.6 149 73.2
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 9.4e-51 203.8 149 72.5
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 4.7e-50 201.4 148 68.9
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.5e-48 196.4 149 68.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 5.7e-48 194.5 144 72.2
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.1e-46 188.3 150 66.0
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.0e-45 186.0 149 65.8
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.0e-44 183.7 150 68.0
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.7e-44 183.0 150 64.0
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 6.5e-44 181.0 148 66.2
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 6.5e-44 181.0 148 62.8
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 8.6e-44 180.6 149 65.1
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.5e-43 179.1 160 62.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 3.3e-43 178.7 149 63.8
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 4.2e-43 178.3 148 62.8
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 9.5e-43 177.2 148 62.2
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 9.5e-43 177.2 149 63.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.2e-42 176.8 148 64.2
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.6e-42 176.4 148 62.2
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.6e-42 175.3 147 64.6
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 4.7e-42 174.9 146 65.8
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.0e-41 173.7 146 60.3
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 6.8e-41 171.0 156 60.9
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 6.8e-41 171.0 148 60.8
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 2.0e-40 169.5 150 64.0
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.0e-40 169.5 150 62.0
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 3.4e-40 168.7 149 62.4
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 5.7e-40 167.9 148 61.5
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 9.8e-40 167.2 148 61.5
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.3e-39 166.8 149 62.4
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.3e-39 166.8 149 62.4
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.7e-39 166.4 148 61.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.2e-39 166.0 151 57.6
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.8e-39 165.6 150 62.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.8e-39 165.6 151 62.3
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 6.3e-39 164.5 150 62.7
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.8e-38 162.9 149 60.4
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 60.7
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 62.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-38 162.5 150 62.0
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 2.4e-38 162.5 145 59.3
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 4.1e-38 161.8 150 61.3
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 4.1e-38 161.8 150 62.0
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.1e-38 161.8 152 61.8
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.2e-37 160.2 146 59.6
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.6e-37 159.8 151 60.3
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.7e-37 159.1 151 60.9
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.5e-37 158.7 152 61.2
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 4.5e-37 158.3 154 60.4
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 7.8e-37 157.5 98 79.6
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.0e-36 157.1 154 57.1
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.3e-36 156.8 150 62.0
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.7e-36 156.4 152 60.5
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.9e-36 155.6 153 62.1
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 6.6e-36 154.5 151 60.9
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.1e-35 153.7 149 57.0
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.1e-35 153.7 142 59.9
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.3e-35 152.1 153 54.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.3e-35 151.8 152 56.6
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 148 56.8
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 150 53.3
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.2e-34 150.2 148 56.1
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.6e-34 149.8 148 60.1
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-34 149.4 150 58.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 2.8e-34 149.1 148 60.1
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.8e-34 149.1 150 56.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 3.6e-34 148.7 150 56.0
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 4.7e-34 148.3 159 57.9
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 8.0e-34 147.5 148 56.1
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.8e-33 146.4 124 58.1
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.8e-33 146.4 148 52.7
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.3e-33 146.0 124 61.3
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 2.3e-33 146.0 143 58.7
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.3e-33 146.0 144 60.4
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 5.2e-33 144.8 148 56.1
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 8.9e-33 144.1 142 58.5
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.2e-32 143.7 151 55.6
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 5.8e-32 141.4 154 55.2
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 5.8e-32 141.4 171 52.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.7e-31 139.8 97 75.3
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.9e-31 139.0 163 54.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.9e-31 139.0 161 53.4
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.1e-30 137.1 130 51.5
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.4e-30 136.7 159 52.2
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.4e-30 136.7 152 53.3
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 4.6e-29 131.7 170 48.2
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 3.0e-28 129.0 156 49.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 9.5e-27 124.0 147 53.1
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 2.8e-26 122.5 125 52.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 6.8e-25 117.9 92 63.0
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 8.9e-25 117.5 125 54.4
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 3.7e-23 112.1 126 54.8
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.4e-23 111.3 93 61.3
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.4e-22 109.4 136 46.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 6.0e-21 104.8 149 42.3
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.5e-19 100.1 172 41.9
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 5.6e-19 98.2 157 39.5
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 9.5e-19 97.4 129 43.4
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 2.8e-18 95.9 91 53.8
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 8.9e-17 90.9 148 45.9
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.5e-16 90.1 75 62.7
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 4.4e-16 88.6 61 75.4
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.4e-14 83.6 117 40.2
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 7.1e-14 81.3 125 40.8
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 2.7e-13 79.3 91 47.3
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 3.5e-13 79.0 95 44.2
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.1e-11 73.9 63 60.3
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 9.5e-11 70.9 60 60.0
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 1.1e-09 67.4 93 44.1
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.4e-09 67.0 93 45.2
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 1.8e-09 66.6 97 42.3
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.4e-09 66.2 128 34.4
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 4.0e-09 65.5 78 50.0
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 4.0e-09 65.5 55 60.0
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.2e-08 63.9 102 40.2
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.2e-07 59.7 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 6.4e-07 58.2 58 48.3
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 2.4e-06 56.2 72 43.1


User provided reference genes

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