Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-30 136.0 67 100.0
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.1e-30 136.0 67 100.0
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.1e-25 117.9 67 89.6
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.9e-25 116.7 67 89.6
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.3e-20 102.4 60 81.7
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-19 99.4 60 80.0
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 1.5e-19 99.0 64 82.8
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 4.3e-19 97.4 60 76.7
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.2e-18 93.6 62 77.4
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-17 92.4 61 80.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-17 92.4 61 80.3
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 3.1e-17 91.3 61 78.7
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.0e-17 90.9 61 78.7
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 9.0e-17 89.7 61 78.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.6e-16 88.2 60 75.0
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.5e-16 87.4 61 77.0
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 4.9e-15 84.0 57 70.2
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-14 82.8 59 71.2
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 7.4e-11 70.1 62 66.1
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-10 69.3 62 64.5
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 3.7e-10 67.8 59 61.0
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 3.7e-10 67.8 62 64.5
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 6.2e-10 67.0 58 63.8
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 8.2e-10 66.6 58 55.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.2e-10 66.6 64 54.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.1e-09 66.2 61 60.7
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.8e-09 65.5 48 66.7
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.4e-09 65.1 68 60.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.0e-09 64.3 55 65.5
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 4.0e-09 64.3 68 57.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 5.3e-09 63.9 64 59.4
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.3e-09 63.9 63 57.1
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 9.0e-09 63.2 64 54.7
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-08 62.8 62 59.7
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.5e-08 62.4 46 63.0
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.5e-08 62.4 46 63.0
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.5e-08 62.4 46 63.0
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.0e-08 62.0 64 56.2
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.6e-08 61.6 58 58.6
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.6e-08 61.6 69 58.0
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 2.6e-08 61.6 48 58.3
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 3.4e-08 61.2 67 50.7
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 4.5e-08 60.8 65 56.9
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.5e-08 60.8 47 59.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.5e-08 60.8 61 54.1
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 5.8e-08 60.5 65 55.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 5.8e-08 60.5 58 53.4
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-08 60.5 41 68.3
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 7.6e-08 60.1 61 52.5
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 7.6e-08 60.1 61 52.5
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 7.6e-08 60.1 56 55.4
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-07 59.7 66 50.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.0e-07 59.7 66 50.0
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.0e-07 59.7 49 59.2
FAN23G2683 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.0e-07 59.7 65 55.4
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.0e-07 59.7 44 65.9
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.0e-07 59.7 64 60.9
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-07 59.3 65 55.4
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-07 59.3 45 62.2
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.3e-07 59.3 63 54.0
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.3e-07 59.3 57 50.9
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.2e-07 58.5 64 60.9
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 2.9e-07 58.2 65 53.8
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 2.9e-07 58.2 64 56.2
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-07 57.8 65 56.9
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 3.8e-07 57.8 65 56.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 3.8e-07 57.8 65 56.9
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 3.8e-07 57.8 61 55.7
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 4.9e-07 57.4 66 50.0
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 6.5e-07 57.0 64 57.8
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 6.5e-07 57.0 65 56.9
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 6.5e-07 57.0 65 56.9
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.5e-07 57.0 60 55.0
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 8.4e-07 56.6 49 59.2
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.1e-06 56.2 61 55.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-06 55.8 58 56.9
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.4e-06 55.8 53 56.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.9e-06 55.5 60 53.3
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.9e-06 55.5 58 56.9
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.5e-06 55.1 65 50.8
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.5e-06 55.1 65 53.8
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.5e-06 55.1 60 50.0
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.5e-06 55.1 60 50.0
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.5e-06 55.1 66 47.0
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.2e-06 54.7 60 50.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 3.2e-06 54.7 63 49.2
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 3.2e-06 54.7 44 63.6
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 4.2e-06 54.3 45 60.0
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 4.2e-06 54.3 66 48.5
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 4.2e-06 54.3 64 48.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.2e-06 54.3 61 49.2
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 5.5e-06 53.9 67 55.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.5e-06 53.9 42 59.5
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.1e-06 53.5 57 49.1
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 7.1e-06 53.5 38 65.8
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 7.1e-06 53.5 47 61.7
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 9.3e-06 53.1 54 53.7
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 9.3e-06 53.1 65 53.8


User provided reference genes

Program Settings