Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3975 Fragaria x ananassa HOM05D019393 ORTHO05D014895 2.4e-84 315.5 158 100.0
FAN11G3404 Fragaria x ananassa HOM05D019393 ORTHO05D046196 1.5e-41 173.3 127 73.2
FvH4_3g37900 Fragaria vesca HOM05D019393 ORTHO05D046196 8.8e-39 164.1 119 74.8
FvH4_6g19680 Fragaria vesca HOM05D019393 ORTHO05D197212 1.3e-29 133.7 69 92.8
FAN02G3560 Fragaria x ananassa HOM05D019393 ORTHO05D207224 1.0e-18 97.4 52 92.3
FAN02G0660 Fragaria x ananassa HOM05D019393 ORTHO05D005239 1.1e-17 94.0 50 92.0
FAN11G0649 Fragaria x ananassa HOM05D000348 ORTHO05D014895 5.8e-14 81.6 40 97.5
FAN16G0922 Fragaria x ananassa HOM05D000348 ORTHO05D014895 4.9e-13 78.6 44 84.1
FAN10G3405 Fragaria x ananassa HOM05D000348 ORTHO05D014895 4.1e-12 75.5 44 81.8
FAN21G1769 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.2e-08 63.9 30 100.0
FAN25G1714 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.2e-08 63.9 30 100.0
FvH4_3g00400 Fragaria vesca HOM05D000348 ORTHO05D000244 2.8e-08 62.8 30 96.7
PSO832G4352 Papaver somniferum HOM05D000348 ORTHO05D000244 8.1e-08 61.2 30 93.3
Psat4g003080 Pisum sativum HOM05D000348 ORTHO05D000244 1.1e-07 60.8 30 90.0
RcHm_v2.0_Chr5g0000601 Rosa chinensis HOM05D000348 ORTHO05D000244 1.1e-07 60.8 30 93.3
Lalb_Chr12g0195971 Lupinus albus HOM05D000348 ORTHO05D000244 1.4e-07 60.5 30 90.0
arahy.Tifrunner.gnm1.ann1.WI2A41 Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-07 60.1 30 90.0
arahy.Tifrunner.gnm1.ann1.XKSD0A Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-07 60.1 30 90.0
PSO675G3661 Papaver somniferum HOM05D000348 ORTHO05D000244 1.8e-07 60.1 30 90.0
HanXRQChr11g0337001 Helianthus annuus HOM05D000348 ORTHO05D000244 2.3e-07 59.7 30 86.7
Lsat_1_v5_gn_1_130060 Lactuca sativa HOM05D000348 ORTHO05D000244 2.3e-07 59.7 30 86.7
PSO729G0164 Papaver somniferum HOM05D000348 ORTHO05D000244 2.3e-07 59.7 30 90.0
TPR.G5975 Trifolium pratense HOM05D000348 ORTHO05D000244 2.3e-07 59.7 30 86.7
HanXRQChr01g0003611 Helianthus annuus HOM05D000348 ORTHO05D000244 3.1e-07 59.3 30 86.7
Medtr4g133968 Medicago truncatula HOM05D000348 ORTHO05D000244 3.1e-07 59.3 30 86.7
CANSAT56G4373 Cannabis sativa HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Cpa.g.sc27.237 Carica papaya HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Cfa000043 Carpinus fangiana HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Ca_20998_v3 Cicer arietinum L. HOM05D000348 ORTHO05D000244 4.0e-07 58.9 39 71.8
COL.COLO4_31933 Corchorus olitorius HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Haze_07011 Corylus avellana HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Duzib160G0229 Durio zibethinus HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Duzib235G1390 Durio zibethinus HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Eucgr.L00157 Eucalyptus grandis HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Glyma.07G267800 Glycine max HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Glyma.17G006100 Glycine max HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Lsat_1_v5_gn_7_13121 Lactuca sativa HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 86.7
Lj2A257T65 Lonicera japonica HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Lalb_Chr13g0304351 Lupinus albus HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
MBI15_g40975_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D014895 4.0e-07 58.9 30 90.0
MBI15_g47693_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D014895 4.0e-07 58.9 30 90.0
MBI16_g14392_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Nn1g03194 Nelumbo nucifera HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Phvul.003G086500 Phaseolus vulgaris HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Potri.006G006000 Populus trichocarpa HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Potri.016G006500 Populus trichocarpa HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
PGR042G1669 Punica granatum HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Sabra06G0004800 Salix brachista HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Sabra16G0011300 Salix brachista HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Sed0025512 Sechium edule HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 86.7
Thecc.06G240000 Theobroma cacao HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
TAR629G0261 Trochodendron aralioides HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
VMungo1127G1895 Vigna mungo HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
VMungo1215G2381 Vigna mungo HOM05D000348 ORTHO05D000244 4.0e-07 58.9 30 90.0
Atru.chr4.803 Acer truncatum HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
ClCG01G011090 Citrullus lanatus HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
MELO3C026099.2 Cucumis melo HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
CsaV3_1G015650 Cucumis sativus L. HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
Dinv04399 Davidia involucrata HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
Dinv15343 Davidia involucrata HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
Eucgr.E03859 Eucalyptus grandis HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
PSO063G4966 Papaver somniferum HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
PSO832G1343 Papaver somniferum HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
QL05p067859 Quercus lobata HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
Sed0013232 Sechium edule HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
GSVIVG01005133001 Vitis vinifera HOM05D000348 ORTHO05D000244 5.2e-07 58.5 30 86.7
Lju926A3T39 Lonicera japonica HOM05D000348 ORTHO05D000244 6.8e-07 58.2 30 83.3
Atru.chr1.2278 Acer truncatum HOM05D000348 ORTHO05D000244 8.9e-07 57.8 30 86.7
Aa31LG2G12430 Aethionema arabicum HOM05D000348 ORTHO05D000244 8.9e-07 57.8 39 71.8
arahy.Tifrunner.gnm1.ann1.F397ET Arachis hypogaea HOM05D000348 ORTHO05D014895 8.9e-07 57.8 30 86.7
CARHR222740 Cardamine hirsuta HOM05D000348 ORTHO05D000244 8.9e-07 57.8 30 86.7
AL7G38670 Arabidopsis lyrata HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Carub.0007s2516 Capsella rubella HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Ciclev10014396m.g Citrus clementina HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
ECA248G2537 Erigeron canadensis HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 83.3
Gohir.A06G156900 Gossypium hirsutum HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Gohir.D06G163200 Gossypium hirsutum HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Gorai.010G190300 Gossypium raimondii HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Hma1.2p1_0372F.1_g138370 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 83.3
Manes.09G082900 Manihot esculenta HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Os03g0751100 Oryza sativa ssp. japonica HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
Sc05g0009820 Simmondsia chinensis HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
THA.LOC104815474 Tarenaya hassleriana HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.2e-06 57.4 39 66.7
TWI63G1322 Tripterygium wilfordii HOM05D000348 ORTHO05D000244 1.2e-06 57.4 30 86.7
CDE04G0960 Ceratophyllum demersum HOM05D000348 ORTHO05D000244 1.5e-06 57.0 30 86.7
CDE07G0358 Ceratophyllum demersum HOM05D000348 ORTHO05D000244 1.5e-06 57.0 30 86.7
ATR0827G135 Amborella trichopoda HOM05D000348 ORTHO05D000244 2.0e-06 56.6 39 66.7
Hma1.2p1_1175F.1_g263950 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 2.0e-06 56.6 30 86.7
Hma1.2p1_1780F.1_g302065 Hydrangea macrophylla HOM05D000348 ORTHO05D000244 2.0e-06 56.6 30 86.7
Lj4g0022244 Lotus japonicus HOM05D000348 ORTHO05D000244 2.0e-06 56.6 30 86.7
MD05G1360700 Malus domestica HOM05D000348 ORTHO05D000244 2.0e-06 56.6 30 80.0
SHI24436 Sapria himalayana HOM05D000348 ORTHO05D000244 2.0e-06 56.6 30 80.0
Actinidia02287 Actinidia chinensis HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
AT4G16370 Arabidopsis thaliana HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
BcaB04g18379 Brassica carinata HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
BcaC07g37979 Brassica carinata HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
A08p12260 Brassica napus HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
BolC8t48361H Brassica oleracea HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
BraA08t33232Z Brassica rapa HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
Thhalv10024512m.g Eutrema salsugineum HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
Rhsim13G0141400 Rhododendron simsii HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
Sp7g14890 Schrenkiella parvula HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
vmacro03615 Vaccinium macrocarpon HOM05D000348 ORTHO05D000244 2.6e-06 56.2 30 83.3
Ah.09g233930 Amaranthus hybridus HOM05D000348 ORTHO05D000244 3.4e-06 55.8 30 83.3
SalBow8G5006 Salvia bowleyana HOM05D000348 ORTHO05D000244 3.4e-06 55.8 30 80.0
arahy.Tifrunner.gnm1.ann1.6RC7K9 Arachis hypogaea HOM05D000348 ORTHO05D014895 4.4e-06 55.5 30 83.3
HPP92_019320 Vanilla planifolia HOM05D000348 ORTHO05D000244 4.4e-06 55.5 30 83.3
CAN.G1156.13 Capsicum annuum HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
AUR62012840 Chenopodium quinoa HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
AUR62021819 Chenopodium quinoa HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
Solyc11g012700.2 Solanum lycopersicum HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
Sopen11g007430 Solanum pennellii HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
PGSC0003DMG400013297 Solanum tuberosum HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
unitig_37.g12180 Utricularia gibba HOM05D000348 ORTHO05D000244 5.8e-06 55.1 30 83.3
MSTRG.7134 Avicennia marina HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
CSS0006019 Camellia sinensis var. sinensis HOM05D000348 ORTHO05D000244 7.6e-06 54.7 29 82.8
Cc09_g00420 Coffea canephora HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
Migut.M01440 Erythranthe guttata HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
Nitab4.5_0001296g0030 Nicotiana tabacum HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
Peaxi162Scf00442g00710 Petunia axillaris HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
SGA_v2.0_scaffold7G03702 Striga asiatica HOM05D000348 ORTHO05D000244 7.6e-06 54.7 30 80.0
EL10Ac8g20257 Beta vulgaris HOM05D000348 ORTHO05D000244 9.9e-06 54.3 39 66.7
SGA_v2.0_scaffold186G40117 Striga asiatica HOM05D000348 ORTHO05D000244 9.9e-06 54.3 30 76.7


User provided reference genes

Program Settings