Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 8.3e-271 936.4 464 100.0
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 4.1e-270 934.1 464 99.8
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 8.6e-268 926.4 464 98.9
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 3.3e-267 924.5 464 98.7
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 2.2e-255 885.2 464 94.0
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 3.3e-235 818.1 462 85.7
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 5.0e-231 804.3 466 85.0
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 6.5e-223 777.3 466 80.7
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 8.5e-223 776.9 407 96.3
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 8.8e-212 740.3 465 77.0
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 4.1e-209 731.5 465 75.5
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 2.6e-208 728.8 476 75.2
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 1.1e-206 723.4 465 75.9
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 5.5e-206 721.1 464 73.7
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 1.2e-205 719.9 465 74.8
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 3.6e-205 718.4 468 74.4
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 1.1e-203 713.4 469 74.8
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 1.5e-203 713.0 464 74.8
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 2.0e-203 712.6 463 75.8
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 4.4e-203 711.4 464 73.5
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 7.4e-203 710.7 466 75.1
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 1.7e-202 709.5 464 72.4
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 2.2e-202 709.1 468 74.6
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.8e-201 706.1 465 74.0
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 1.8e-201 706.1 462 73.6
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 2.4e-201 705.7 465 72.0
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 7.0e-201 704.1 471 73.0
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 9.1e-201 703.7 462 73.4
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 9.1e-201 703.7 464 72.0
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 2.0e-200 702.6 467 74.7
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 3.5e-200 701.8 467 74.9
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 7.7e-200 700.7 463 73.0
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 2.2e-199 699.1 461 73.8
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 2.9e-199 698.7 467 73.7
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 5.0e-199 698.0 469 72.3
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 6.5e-199 697.6 464 72.6
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 8.5e-199 697.2 462 71.6
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 7.2e-198 694.1 472 71.2
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 9.4e-198 693.7 471 72.8
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 1.2e-197 693.3 424 76.4
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 1.6e-197 693.0 464 73.5
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 4.7e-197 691.4 464 73.3
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 4.7e-197 691.4 486 70.4
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 6.1e-197 691.0 463 73.0
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 1.0e-196 690.3 461 71.4
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 2.3e-196 689.1 464 70.9
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 5.2e-196 688.0 461 70.9
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 6.8e-196 687.6 466 73.4
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 1.2e-195 686.8 510 66.9
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 3.4e-195 685.3 454 71.8
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 5.7e-195 684.5 467 70.7
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 8.3e-194 680.6 460 73.3
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 8.3e-194 680.6 470 69.8
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 1.4e-193 679.9 457 71.8
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 1.8e-193 679.5 465 69.7
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 1.8e-193 679.5 459 71.2
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 2.4e-193 679.1 461 73.3
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 3.1e-193 678.7 465 72.9
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 4.1e-193 678.3 464 70.7
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 5.4e-193 677.9 467 69.2
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 7.0e-193 677.6 466 69.3
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 7.0e-193 677.6 459 71.5
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 1.2e-192 676.8 465 72.5
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 1.2e-192 676.8 466 71.9
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 1.2e-192 676.8 468 71.6
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 2.2e-191 672.5 459 72.3
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 2.9e-191 672.2 465 72.0
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 1.1e-190 670.2 464 71.8
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 3.2e-190 668.7 459 70.2
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 7.2e-190 667.5 465 71.4
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 1.0e-188 663.7 465 71.4
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 1.0e-188 663.7 465 71.4
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 2.3e-188 662.5 484 68.4
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 3.0e-188 662.1 465 71.2
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 3.0e-188 662.1 465 71.2
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 1.2e-187 660.2 469 69.1
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 2.0e-187 659.4 460 70.0
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 2.6e-187 659.1 465 70.8
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 2.8e-186 655.6 469 68.7
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 3.5e-184 648.7 462 68.6
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 5.6e-182 641.3 464 66.6
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 9.5e-182 640.6 382 78.5
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 3.4e-179 632.1 470 66.2
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 4.9e-178 628.2 455 65.5
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 2.4e-177 625.9 396 74.7
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 1.4e-164 583.6 407 68.8
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 2.2e-162 576.2 421 64.8
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 3.7e-162 575.5 387 73.1
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 6.4e-162 574.7 411 65.5
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 9.2e-161 570.9 421 64.8
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 5.2e-148 528.5 470 59.1
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 2.7e-144 516.2 324 77.8
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 5.4e-137 491.9 453 57.0
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 1.0e-135 487.6 345 69.3
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 1.1e-121 441.0 400 55.2
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 4.8e-117 425.6 405 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 5.3e-116 422.2 402 51.7
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 2.9e-114 416.4 397 51.9
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 4.3e-110 402.5 396 52.0
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 2.0e-91 340.5 393 44.3
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 8.8e-79 298.5 198 70.7
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 1.9e-65 254.2 187 66.3
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.9e-65 254.2 196 61.7
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.9e-65 254.2 196 61.7
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.4e-54 216.9 194 56.2
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 4.3e-25 120.2 94 64.9
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 2.4e-20 104.4 62 75.8


User provided reference genes

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