Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.2e-126 455.7 233 100.0
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.2e-126 455.7 233 100.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.3e-126 454.1 233 99.6
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.7e-121 438.0 233 95.3
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.8e-120 433.7 233 95.3
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 7.8e-100 367.5 229 83.8
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 3.6e-89 332.0 232 70.3
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.9e-82 309.7 223 69.1
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-78 296.6 244 70.9
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 5.1e-75 285.0 227 64.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.5e-74 282.7 237 61.6
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 9.6e-74 280.8 231 62.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.4e-72 276.9 229 62.0
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.8e-72 276.6 230 61.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 2.6e-71 272.7 227 56.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 5.8e-71 271.6 227 61.7
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.9e-70 269.2 227 62.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.1e-69 267.3 228 61.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.4e-69 266.9 232 59.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.4e-69 266.2 229 59.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.2e-68 263.8 227 62.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.2e-68 263.8 227 58.1
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.6e-68 263.5 227 62.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.1e-68 263.1 227 61.7
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.0e-68 261.5 227 60.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.0e-68 261.5 223 57.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 6.0e-68 261.5 232 56.9
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.8e-68 261.2 227 55.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.8e-68 261.2 227 58.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.0e-67 260.8 227 56.4
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.0e-67 260.8 230 59.6
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.3e-67 260.4 227 59.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.7e-67 260.0 227 59.0
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.0e-67 259.2 223 56.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.9e-67 258.8 227 59.0
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 6.6e-67 258.1 228 55.3
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.1e-66 257.3 227 56.4
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-66 257.3 229 59.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-66 256.9 228 59.2
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-66 256.9 228 61.0
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.5e-66 256.1 226 55.8
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.5e-66 256.1 234 56.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 4.3e-66 255.4 223 58.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 7.3e-66 254.6 223 54.3
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 9.6e-66 254.2 239 54.0
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.3e-65 253.8 223 54.7
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.6e-65 253.4 223 54.7
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.2e-65 251.5 226 58.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 6.2e-65 251.5 223 54.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 8.1e-65 251.1 227 56.8
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.1e-64 250.8 223 57.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.8e-64 250.0 223 57.4
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-64 250.0 223 52.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.1e-64 249.2 223 53.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.1e-64 249.2 227 54.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.0e-64 248.8 223 53.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.0e-64 248.8 226 58.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 5.3e-64 248.4 226 56.6
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 9.0e-64 247.7 228 54.4
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.2e-63 247.3 229 58.1
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.2e-63 247.3 227 55.1
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.0e-63 246.5 228 51.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.6e-63 246.1 228 55.7
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 5.8e-63 245.0 227 55.5
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 7.6e-63 244.6 225 54.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.3e-62 243.8 236 53.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.7e-62 243.4 230 54.3
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.9e-62 242.7 223 56.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.9e-62 242.7 223 56.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.8e-62 242.3 229 56.3
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 6.4e-62 241.5 227 54.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.4e-62 241.1 227 57.3
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 8.4e-62 241.1 219 54.8
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.4e-62 241.1 226 54.4
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.1e-61 240.7 228 56.1
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-61 240.4 229 57.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.4e-61 240.4 241 52.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.9e-61 240.0 229 55.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.9e-61 240.0 227 53.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.4e-61 239.6 239 53.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.4e-61 239.6 239 53.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.4e-61 239.6 229 57.2
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 3.2e-61 239.2 233 54.9
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.2e-61 239.2 228 55.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.2e-61 238.8 227 57.7
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 4.2e-61 238.8 227 55.5
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 5.4e-61 238.4 229 56.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 7.1e-61 238.0 230 54.8
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.2e-60 237.3 227 55.5
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.7e-60 236.1 227 53.7
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-60 236.1 226 53.5
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.7e-60 236.1 235 50.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 3.5e-60 235.7 213 58.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.5e-60 235.7 229 55.0
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.5e-60 235.7 226 54.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.6e-60 235.3 227 55.1
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.0e-60 235.0 248 50.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.0e-59 234.2 219 53.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-59 233.8 229 55.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.3e-59 233.0 227 52.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 3.9e-59 232.3 253 51.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-59 232.3 226 52.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.7e-59 231.5 236 51.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 8.7e-59 231.1 229 55.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 8.7e-59 231.1 226 53.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 8.7e-59 231.1 227 55.9
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.1e-58 230.7 226 52.2
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 3.3e-58 229.2 172 64.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.3e-58 228.8 227 50.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 7.4e-58 228.0 229 55.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 9.6e-58 227.6 249 51.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.8e-57 226.1 227 49.8
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.8e-57 226.1 226 52.7
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.8e-57 225.3 242 50.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 6.2e-57 224.9 227 51.1
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-56 224.2 231 48.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.4e-56 223.8 230 53.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-56 223.8 230 53.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.0e-56 222.2 219 49.8
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 5.3e-56 221.9 239 50.2
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.0e-56 221.1 229 51.1
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 9.0e-56 221.1 250 50.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.0e-55 219.9 229 53.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 7.6e-55 218.0 165 61.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.3e-54 217.2 269 47.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.7e-54 216.9 280 42.9
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.4e-54 214.9 238 45.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.2e-52 210.7 204 50.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.7e-52 209.5 154 61.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.3e-51 206.5 143 69.9
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 5.6e-50 201.8 223 47.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.3e-49 200.7 249 46.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 5.3e-48 195.3 134 65.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.2e-47 194.1 129 72.1
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.2e-46 189.9 131 66.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.2e-45 185.7 264 42.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 5.5e-45 185.3 204 49.5
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.1e-44 183.3 129 68.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.0e-43 181.0 132 64.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.3e-43 180.6 209 50.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.0e-43 179.5 228 46.9
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.5e-42 177.2 130 68.5
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.5e-42 176.4 122 66.4
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.2e-41 173.3 140 56.4
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.7e-41 172.6 152 50.7
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.1e-40 169.1 128 62.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.5e-37 159.8 125 60.8
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 9.1e-32 141.4 129 58.1
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 7.7e-31 138.3 87 72.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.1e-28 130.2 84 66.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 8.2e-25 118.2 108 57.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 2.0e-23 113.6 233 31.8
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-21 106.3 88 61.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.0e-19 101.3 124 41.9
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.8e-19 98.2 181 36.5
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.8e-16 90.5 123 39.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 7.7e-15 85.1 124 35.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 8.5e-14 81.6 133 33.1
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-12 77.4 77 48.1
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.0e-11 72.8 109 45.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.8e-09 66.6 80 41.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.8e-08 63.9 73 42.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.4e-08 63.5 96 45.8
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 2.9e-06 56.6 63 42.9


User provided reference genes

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